Re(2): [GE users] can't open output file error

Patrice Seyed apseyed at bu.edu
Sat Jul 31 05:00:55 BST 2004


Reuti,

Here is the qstat -j of a job that ended in Eqw, there was no stderr or
stdout path list variable is this output. The interesting thing is that
its not consistent (i got the errors with and without #$ -j y), and the
jobs that don't get run right away go into "Eqw" state. If you have any
other ideas let me know. thx

-Patrice

[apseyed at linga dd]$ qstat -j  20940
job_number:                 20940
exec_file:                  job_scripts/20940
submission_time:            Fri Jul 30 23:22:56 2004
owner:                      apseyed
uid:                        501
group:                      apseyed
gid:                        501
sge_o_home:                 /home/apseyed
sge_o_log_name:             apseyed
sge_o_path:
/opt/gridengine/bin/glinux:/opt/nmi/bin:/opt/nmi/sbin:/opt/gridengine/bin/glinux:/usr/kerberos/bin:/opt/intel_fc_80/bin:/opt/intel_cc_80/bin:/usr/local/bin:/bin:/usr/bin:/usr/X11R6/bin:/opt/ganglia/bin:/apps/genetics/bin:/usr/java/j2sdk1.4.2_02/bin:/opt/rocks/bin:/opt/rocks/sbin:/sbin:/usr/sbin:/usr/linga/sbin:/usr/linga/bin:/usr/nas-0-0/sbin:/usr/nas-0-0/sbin:/opt/nmi/bin:/opt/xcat/bin:/home/apseyed/bin
sge_o_mail:                 /var/spool/mail/apseyed
sge_o_shell:                /bin/bash
sge_o_workdir:              /home/apseyed/scripts/dd
sge_o_host:                 linga
account:                    sge
cwd:                        /home/apseyed/scripts/dd
path_aliases:               /tmp_mnt/ * * /
merge:                      y
hard resource_list:         express=false
mail_list:                  apseyed at linga.bumc.bu.edu
notify:                     FALSE
job_name:                   job-4-13-j1
script_file:                ./dat/job-4-13-j1
scheduling info:            queue "compute-3-9.q" dropped because it is
temporarily not available
                            queue "express-3-9.q" dropped because it is
temporarily not available
                            queue "express-1-10.q" dropped because it is
overloaded: np_load_avg=2.025000 (= 1.420000 + 0.50 * 2.420000 with
nproc=2) >= 1.75
                            queue "express-1-11.q" dropped because it is
overloaded: np_load_avg=2.025000 (= 1.420000 + 0.50 * 2.420000 with
nproc=2) >= 1.75
                            queue "express-5-14.q" dropped because it is
overloaded: np_load_avg=1.967500 (= 1.665000 + 0.50 * 1.210000 with
nproc=2) >= 1.75
                            queue "compute-1-10.q" dropped because it is
overloaded: np_load_avg=2.025000 (= 1.420000 + 0.50 * 2.420000 with
nproc=2) >= 1.75
                            queue "compute-5-14.q" dropped because it is
overloaded: np_load_avg=1.967500 (= 1.665000 + 0.50 * 1.210000 with
nproc=2) >= 1.75
                            queue "compute-1-11.q" dropped because it is
overloaded: np_load_avg=2.025000 (= 1.420000 + 0.50 * 2.420000 with
nproc=2) >= 1.75
                            queue "compute-6-8.q" dropped because it is
full
                            queue "compute-9-14.q" dropped because it is
full
                            queue "compute-9-13.q" dropped because it is
full
                            queue "compute-1-12.q" dropped because it is
full
                            queue "compute-2-11.q" dropped because it is
full
                            queue "compute-4-14.q" dropped because it is
full
                            queue "compute-5-11.q" dropped because it is
full
                            queue "compute-3-14.q" dropped because it is
full
                            queue "compute-9-10.q" dropped because it is
full
                            queue "compute-5-5.q" dropped because it is
full
                            queue "compute-2-2.q" dropped because it is
full
                            queue "compute-7-2.q" dropped because it is
full
                            queue "compute-8-1.q" dropped because it is
full
                            queue "compute-7-12.q" dropped because it is
full
                            queue "compute-5-7.q" dropped because it is
full
                            queue "compute-7-10.q" dropped because it is
full
                            queue "compute-1-3.q" dropped because it is
full
                            queue "compute-2-8.q" dropped because it is
full
                            queue "compute-10-1.q" dropped because it is
full
                            queue "compute-1-14.q" dropped because it is
full
                            queue "compute-7-9.q" dropped because it is
full
                            queue "compute-1-1.q" dropped because it is
full
                            queue "compute-7-8.q" dropped because it is
full
                            queue "compute-2-6.q" dropped because it is
full
                            queue "compute-2-10.q" dropped because it is
full
                            queue "compute-4-9.q" dropped because it is
full
                            queue "compute-7-7.q" dropped because it is
full
                            queue "compute-1-6.q" dropped because it is
full
                            queue "compute-1-13.q" dropped because it is
full
                            queue "compute-1-2.q" dropped because it is
full
                            queue "compute-10-6.q" dropped because it is
full
                            queue "compute-2-12.q" dropped because it is
full
                            queue "compute-6-14.q" dropped because it is
full
                            queue "compute-1-9.q" dropped because it is
full
                            queue "compute-2-5.q" dropped because it is
full
                            queue "compute-7-1.q" dropped because it is
full
                            queue "compute-7-13.q" dropped because it is
full
                            queue "compute-2-4.q" dropped because it is
full
                            queue "compute-1-8.q" dropped because it is
full
                            queue "compute-1-7.q" dropped because it is
full
                            queue "compute-1-4.q" dropped because it is
full
                            queue "compute-7-14.q" dropped because it is
full
                            queue "compute-2-14.q" dropped because it is
full
                            queue "compute-2-7.q" dropped because it is
full
                            queue "compute-9-2.q" dropped because it is
full
                            queue "compute-5-2.q" dropped because it is
full
                            queue "compute-3-10.q" dropped because it is
full
                            queue "compute-4-10.q" dropped because it is
full
                            queue "compute-10-4.q" dropped because it is
full
                            queue "compute-10-7.q" dropped because it is
full
                            queue "compute-4-11.q" dropped because it is
full
                            queue "compute-6-5.q" dropped because it is
full
                            queue "compute-6-1.q" dropped because it is
full
                            queue "compute-8-5.q" dropped because it is
full
                            queue "compute-10-8.q" dropped because it is
full
                            queue "compute-8-4.q" dropped because it is
full
                            queue "compute-5-9.q" dropped because it is
full
                            queue "compute-6-6.q" dropped because it is
full
                            queue "compute-5-8.q" dropped because it is
full
                            queue "compute-9-9.q" dropped because it is
full
                            queue "compute-10-5.q" dropped because it is
full
                            queue "compute-4-8.q" dropped because it is
full
                            queue "compute-9-12.q" dropped because it is
full
                            queue "compute-5-3.q" dropped because it is
full
                            queue "compute-3-6.q" dropped because it is
full
                            queue "compute-3-12.q" dropped because it is
full
                            queue "compute-4-3.q" dropped because it is
full
                            queue "compute-9-6.q" dropped because it is
full
                            queue "compute-6-7.q" dropped because it is
full
                            queue "compute-4-7.q" dropped because it is
full
                            queue "compute-4-12.q" dropped because it is
full
                            queue "compute-9-8.q" dropped because it is
full
                            queue "compute-6-12.q" dropped because it is
full
                            queue "compute-9-7.q" dropped because it is
full
                            queue "compute-8-6.q" dropped because it is
full
                            queue "compute-10-2.q" dropped because it is
full
                            queue "compute-8-3.q" dropped because it is
full
                            queue "compute-5-4.q" dropped because it is
full
                            queue "compute-3-2.q" dropped because it is
full
                            queue "compute-3-4.q" dropped because it is
full
                            queue "compute-8-8.q" dropped because it is
full
                            queue "compute-8-10.q" dropped because it is
full
                            queue "compute-5-10.q" dropped because it is
full
                            queue "compute-8-2.q" dropped because it is
full
                            queue "compute-3-8.q" dropped because it is
full
                            queue "compute-8-7.q" dropped because it is
full
                            queue "compute-4-6.q" dropped because it is
full
                            queue "compute-3-13.q" dropped because it is
full
                            queue "compute-3-7.q" dropped because it is
full
                            queue "compute-4-2.q" dropped because it is
full
                            queue "compute-8-12.q" dropped because it is
full
                            queue "compute-7-6.q" dropped because it is
full
                            queue "compute-7-11.q" dropped because it is
full
                            queue "compute-2-3.q" dropped because it is
full
                            queue "compute-1-5.q" dropped because it is
full
                            queue "compute-9-4.q" dropped because it is
full
                            queue "compute-6-4.q" dropped because it is
full
                            queue "compute-6-9.q" dropped because it is
full
                            queue "compute-8-14.q" dropped because it is
full
                            queue "compute-4-13.q" dropped because it is
full
                            queue "compute-8-11.q" dropped because it is
full
                            queue "compute-6-3.q" dropped because it is
full
                            queue "compute-9-1.q" dropped because it is
full
                            queue "compute-6-10.q" dropped because it is
full
                            queue "compute-6-13.q" dropped because it is
full
                            queue "compute-7-5.q" dropped because it is
full
                            queue "compute-5-6.q" dropped because it is
full
                            queue "compute-9-11.q" dropped because it is
full
                            queue "compute-3-11.q" dropped because it is
full
                            queue "compute-7-4.q" dropped because it is
full
                            queue "compute-9-5.q" dropped because it is
full
                            queue "compute-3-1.q" dropped because it is
full
                            queue "compute-4-1.q" dropped because it is
full
                            queue "compute-3-5.q" dropped because it is
full
                            queue "compute-7-3.q" dropped because it is
full
                            queue "compute-2-9.q" dropped because it is
full
                            queue "compute-2-1.q" dropped because it is
full
                            queue "compute-6-11.q" dropped because it is
full
                            queue "compute-9-3.q" dropped because it is
full
                            queue "compute-8-9.q" dropped because it is
full
                            queue "compute-3-3.q" dropped because it is
full
                            job is in error state


On Thu, 29 Jul 2004, Reuti wrote:

> >No, just a large number of serial, batch jobs submitted at the same time...
>
> Are you setting the name of the output/error files on your own with -e/-o, or
> are you just using the default?
>
> If it is possible to set them on your own, you could check with qstat -j
> <jobid>, whether the entry for stderr_path_list: or stdout_path_list: is
> already wrong for some jobs. Otherwise the error is occuring during execution.
>
> Reuti
>
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