[GE users] lam tight integration scripts

mark garey garey at biostat.ucsf.edu
Wed Apr 6 23:23:35 BST 2005


i am trying to implement the lam tight qrsh integration scripts, but 
the PeHostfile2MachineFile
function in the startlam.sh script fails with this error when parsing 
each node in the lamhost file:

/export/sge/default/lam_tight_qrsh/startlam.sh: line 32: [: head: 
integer expression expected

where 'head' is a node in the list of nodes in the lamhosts file. this 
error  results in an empty
machines file ( after the lamosts file is read ). as recommended the 
lamhost file format is

if this function is commented out and a vaild list is used from 
/tmp/machines, the job ( tester_mpi.sh
in this case ) migrates out to the number of slots specified in the pe, 
but the equivalent
lam daemons fail to boot on all the nodes and the tester job aborts.

i using the patched hboot and lam 7.1.1.

mark garey
ucsf department of epidemiology and biostatistics
500 parnassus ave, mu420w
san francisco, ca. 94143

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