[GE users] qsub acting up and using 99% CPU.

Stefan.O.Nordlander at astrazeneca.com Stefan.O.Nordlander at astrazeneca.com
Mon Apr 11 09:46:05 BST 2005


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Hi,

I'm hoping this is a no brainer like "erum, well you forgot to turn on the
main auxiliary power relay.."

I'm trying to run para_glide through SGE and I think I have everything set
up ok. But when I submit a job qsub starts and uses 99.9% cpu. An strace
shows me this:

select(1, [0], [0], NULL, {1, 0})       = 1 (out [0], left {1, 0})
gettimeofday({1113205289, 87082}, NULL) = 0
gettimeofday({1113205289, 87121}, NULL) = 0
gettimeofday({1113205289, 87159}, NULL) = 0
gettimeofday({1113205289, 87197}, NULL) = 0
select(1, [0], [0], NULL, {1, 0})       = 1 (out [0], left {1, 0})
gettimeofday({1113205289, 87547}, NULL) = 0
gettimeofday({1113205289, 87585}, NULL) = 0
gettimeofday({1113205289, 87624}, NULL) = 0
gettimeofday({1113205289, 87662}, NULL) = 0
select(1, [0], [0], NULL, {1, 0})       = 1 (out [0], left {1, 0})
gettimeofday({1113205289, 88012}, NULL) = 0
gettimeofday({1113205289, 88051}, NULL) = 0
gettimeofday({1113205289, 88089}, NULL) = 0
gettimeofday({1113205289, 88127}, NULL) = 0
...
...
...

What's going on?
(More details about the job is avalible if necessary.)


Stefan Nordlander - Linux System Manager
________________________________________________
AstraZeneca R&D Mölndal
Pepparedsleden 1
S-431 83 Mölndal, Sweden
Phone:    +46 (0)31 706 49 14
Email:    Stefan.O.Nordlander at astrazeneca.com
________________________________________________
Unix _is_ user friendly, its just picky about who its friends are...



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