[GE users] qsub acting up and using 99% CPU.

Stephan Grell - Sun Germany - SSG - Software Engineer stephan.grell at sun.com
Mon Apr 11 09:53:36 BST 2005


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Hi,

more information would be nice. Which version of SGE? Which OS? What was
the qsub command?

Stephan

Stefan.O.Nordlander at astrazeneca.com wrote:

>Hi,
>
>I'm hoping this is a no brainer like "erum, well you forgot to turn on the
>main auxiliary power relay.."
>
>I'm trying to run para_glide through SGE and I think I have everything set
>up ok. But when I submit a job qsub starts and uses 99.9% cpu. An strace
>shows me this:
>
>select(1, [0], [0], NULL, {1, 0})       = 1 (out [0], left {1, 0})
>gettimeofday({1113205289, 87082}, NULL) = 0
>gettimeofday({1113205289, 87121}, NULL) = 0
>gettimeofday({1113205289, 87159}, NULL) = 0
>gettimeofday({1113205289, 87197}, NULL) = 0
>select(1, [0], [0], NULL, {1, 0})       = 1 (out [0], left {1, 0})
>gettimeofday({1113205289, 87547}, NULL) = 0
>gettimeofday({1113205289, 87585}, NULL) = 0
>gettimeofday({1113205289, 87624}, NULL) = 0
>gettimeofday({1113205289, 87662}, NULL) = 0
>select(1, [0], [0], NULL, {1, 0})       = 1 (out [0], left {1, 0})
>gettimeofday({1113205289, 88012}, NULL) = 0
>gettimeofday({1113205289, 88051}, NULL) = 0
>gettimeofday({1113205289, 88089}, NULL) = 0
>gettimeofday({1113205289, 88127}, NULL) = 0
>...
>...
>...
>
>What's going on?
>(More details about the job is avalible if necessary.)
>
>
>Stefan Nordlander - Linux System Manager
>________________________________________________
>AstraZeneca R&D Mölndal
>Pepparedsleden 1
>S-431 83 Mölndal, Sweden
>Phone:    +46 (0)31 706 49 14
>Email:    Stefan.O.Nordlander at astrazeneca.com
>________________________________________________
>Unix _is_ user friendly, its just picky about who its friends are...
>
>  
>
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