[GE users] SunGrid Engine & BLAST

Ron Chen ron_chen_123 at yahoo.com
Tue Feb 1 13:26:38 GMT 2005


--- Hrishikesh Deshmukh <hdeshmuk at gmail.com> wrote:
> blast$ more blast.csh.e12
> [NULL_Caption] FATAL ERROR: blast: Unable to open input file
> /Users/blast/Library/BLAST/queries//test1

Most likely, "/Users/blast/Library/BLAST/queries//test1" is not installed on the machine that SGE
sent the job to.

SO you either put the blast files in an NFS directory, or install blast on each machine.
 
> ~ blast$ more blast.csh.o12
> Warning: no access to tty (Bad file descriptor).
> Thus no job control in this shell.
>  blastn 2.2.10

This is just a warning message -- in the login scripts, you have commands (e.g. stty) that try to
access the tty.

 -Ron




		
__________________________________ 
Do you Yahoo!? 
Yahoo! Mail - Helps protect you from nasty viruses. 
http://promotions.yahoo.com/new_mail

---------------------------------------------------------------------
To unsubscribe, e-mail: users-unsubscribe at gridengine.sunsource.net
For additional commands, e-mail: users-help at gridengine.sunsource.net




More information about the gridengine-users mailing list