[GE users] SunGrid Engine & BLAST

Hrishikesh Deshmukh hdeshmuk at gmail.com
Fri Jan 14 15:33:42 GMT 2005


Here is what i get, now looking at the output it means that
535,536,537 are not in use and i can use for sge_commd,qmaster and
execd!!! Am i right in inferring this.

 netstat -an | grep 28
tcp4       0      0  129.174.206.93.28      129.174.206.93.49329   ESTABLISHED
tcp4       0      0  129.174.206.93.49329   129.174.206.93.28      ESTABLISHED
tcp4       0      0  129.174.206.93.28      129.174.206.93.49213   ESTABLISHED
tcp4       0      0  129.174.206.93.49213   129.174.206.93.28      ESTABLISHED
tcp4       0      0  *.28                   *.*                    LISTEN
udp4       0      0  *.3283                 *.*                    
 11003f0 stream      0      0        0  1100428        0        0
/var/tmp/SCDynamicStoreNotifyFileDescriptor-19203
 1100428 stream      0      0        0  11003f0        0        0
 1100b28 dgram       0      0        0  1100c78  1100c78        0
 1100c78 dgram       0      0        0  1100b28  1100b28        0
emac21:/usr/local/sge/default/common sgeadmin$ netstat -an | grep 535
udp4       0      0  *.5353                 *.*                    
emac21:/usr/local/sge/default/common sgeadmin$ netstat -an | grep 536
emac21:/usr/local/sge/default/common sgeadmin$ netstat -an | grep 537

Hrishi

On Fri, 14 Jan 2005 10:20:54 -0500 (EST), Paul Mitchell
<pmitchel at email.unc.edu> wrote:
> On Fri, 14 Jan 2005, Hrishikesh Deshmukh wrote:
> 
> > Here is what i get for the commands you suggested to run
> >    starting sge_qmaster
> > starting program: /usr/local/sge/bin/darwin/sge_commd
> > using service "sge_commd"
> > bound to port 28
> > Reading in complexes:
> >         Complex "host".
> >         Complex "queue".
> > Reading in execution hosts.
> > Reading in administrative hosts.
> > Reading in submit hosts.
> > Reading in parallel environments:
> >         PE "make".
> > Reading in scheduler configuration
> >    starting sge_schedd
> 
> > netstat -an | grep $COMMD_PORT
> > Usage: grep [OPTION]... PATTERN [FILE]...
> > Try `grep --help' for more information.
> 
> You're getting an error message from grep, probably because it cannot
> resolve the $COMMD_PORT.  Why not try:
> 
>         netstat -an | grep 28
> 
> or
>         netstat -an | grep 535
> 
> etc.
> 
> > I have to keep setting SGE_ROOT, how do i set it permanently.
> > I had done as suggested in the installation manual
> > SGE_ROOT=/usr/local/sge;export SGE_ROOT;echo $SGE_ROOT
> > Do i need to do anything more.
> 
> I got tried of resetting it so I put the following lines in /etc/profile:
> 
> # The next two lines set up the gridengine environment
> export SGE_ROOT=/usr/local/sge
> . $SGE_ROOT/default/common/settings.sh
> $ echo $SGE_ROOT
> /usr/local/sge
> 
> I also placed the following line in my .kshrc file:
> 
> export SGE_ROOT=/usr/local/sge
> 
> Paul Mitchell
> 
> ==============================================================================
>         Paul Mitchell
>         email: pmitchel at email.unc.edu
>         phone: (919) 962-9778
>         office: I have an office, room 14, Phillips Hall
> ==============================================================================
> 
> 
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