[GE users] SunGrid Engine & BLAST

Hrishikesh Deshmukh hdeshmuk at gmail.com
Fri Jan 14 19:37:52 GMT 2005


Would this matter: I have sge related files in (/usr/local/sge) copied
the files on the machines which i want to use as execution hosts form
the master host and they are not mounted on any NFS!!!

Hrishi


On Fri, 14 Jan 2005 14:01:46 -0500, Hrishikesh Deshmukh
<hdeshmuk at gmail.com> wrote:
> Here are the DIFFERENCES in the outputs for the cmd: netstat -an | grep 28
> on master host:
> tcp4       0      0  129.174.206.93.28      129.174.206.93.50165   ESTABLISHED
> tcp4       0      0  129.174.206.93.50165   129.174.206.93.28      ESTABLISHED
> tcp4       0      0  129.174.206.93.28      129.174.206.93.49213   ESTABLISHED
> tcp4       0      0  129.174.206.93.49213   129.174.206.93.28      ESTABLISHED
> tcp4       0      0  *.28                   *.*                    LISTEN
> udp4       0      0  *.3283                 *.*                    
>  11003f0 dgram       0      0        0  1100fc0        0  1100428
>  1100428 dgram       0      0        0  1100fc0        0  1100850
>  1100b28 dgram       0      0        0  1100c78  1100c78        0
>  1100c78 dgram       0      0        0  1100b28  1100b28        0
> 
> on (potential) executions host:
> udp4       0      0  *.3283                 *.*
>  1104930 dgram       0      0        0  1104fc0        0  1104b28
>  1104b28 dgram       0      0        0  1104fc0        0  1104b60
> 
> The same error is seen on the machine where i am trying to install_execd
> Grid Engine execution daemon startup
> ------------------------------------
> 
> Starting execution daemon daemon. Please wait ...
>    starting sge_execd
> critical error: can't enroll to commd: RESOLVING PROBLEM
> 
> I am trying this on emac running mac os x.
> 
> Thanks,
> Hrishi
> 
> On Fri, 14 Jan 2005 12:11:11 -0500, Hrishikesh Deshmukh
> <hdeshmuk at gmail.com> wrote:
> > Here is the output for the commands suggested:
> > emac22:/usr/local/sge/default/common sgeadmin$ ps -aux|grep commd
> > sgeadmin 12820   0.0  0.1    18172    336 std  S+   12:08PM   0:00.00 grep commd
> >
> > emac22:/usr/local/sge/default/common sgeadmin$ .
> > $SGE_ROOT/default/common/settings.sh
> >
> > emac22:/usr/local/sge/default/common sgeadmin$ printenv COMMD_PORT
> > After this cmd prompt is returned
> >
> > Thanks,
> > Hrishi
> >
> > On Fri, 14 Jan 2005 09:02:32 PST, Rayson Ho <raysonho at eseenet.com> wrote:
> > > Ok, the master side is fine, it is accepting connections.
> > >
> > > Then go to the exec host, and run:
> > >
> > > 1) ps -aux|grep commd
> > > see if there is an old commd running on the exec host?
> > >
> > > 2) after you do ". $SGE_ROOT/default/common/settings.sh"
> > > what is the output of "printenv COMMD_PORT"
> > >
> > > Rayson
> > >
> > >
> > > > Starting execution daemon daemon. Please wait ...
> > > >    starting sge_execd
> > > > critical error: can't enroll to commd: RESOLVING PROBLEM
> > > >
> > > > Port is set, then what is that i am doing wrong!!!
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