[GE users] SunGrid Engine & BLAST

Hrishikesh Deshmukh hdeshmuk at gmail.com
Thu Jan 27 19:35:38 GMT 2005


Sorry a newbie question, what is a wrapper? Also about the first
suggestion what is the install_name_tool!!

% install_name_tool -change libXltree.dylib <libXltree.dylib in your
SGE dir> qmon
 % install_name_tool -change libspoolc.dylib <libspoolc.dylib in your
SGE dir> qmon

Thanks,
H


On Wed, 26 Jan 2005 20:01:42 -0800 (PST), Ron Chen
<ron_chen_123 at yahoo.com> wrote:
> --- Paul Greidanus <paul.greidanus at ualberta.ca> wrote:
> > however, I've had it cause me lots of trouble with
> > other apps
> 
> There are 2 ways around this:
> 
> 1) use install_name_tool
> If you look at the shared library dependency chain:
> % otool -L qmon
> qmon:
>    libXltree.dylib (compatibility version 0.0.0, current version 0.0.0)
>    libspoolc.dylib (compatibility version 0.0.0, current version 0.0.0)
>    ...
> 
> Only libXltree.dylib & libspoolc.dylib do not have an
> absolute path, so use install_name_tool to edit the binary:
> 
> % install_name_tool -change libXltree.dylib <libXltree.dylib in your SGE dir> qmon
> % install_name_tool -change libspoolc.dylib <libspoolc.dylib in your SGE dir> qmon
> (those libs are likely in $SGE_ROOT/lib/darwin/)
> 
> 2) write a wrapper, rename the qmon binary as qmon.real,
> and name the wrapper as qmon, and put it in qmon's
> directory:
> 
> #!/bin/sh
> 
> export DYLD_LIBRARY_PATH=$DYLD_LIBRARY_PATH:/usr/local/sge/lib/darwin
> ./qmon.real
> 
>  -Ron
> 
> 
> >, so you shouldn't do it in your .profile
> > without being
> > careful about how it behaves, and knowing to remove
> > it if it causes trouble.
> 
>                 
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