[GE users] How to find SGE default PATH

Ron Chen ron_chen_123 at yahoo.com
Fri Mar 11 23:34:33 GMT 2005


Yes, SGE by default adds 
<job-tmp- dir>:/usr/local/bin:/usr/ucb:/bin:/usr/bin
to
the PATH.

But you can also submit blast.sh, and may be it's
easier?
 
 -Ron

--- Chunyan Wang <wangch at cpsc.ucalgary.ca> wrote:
> Thanks,
> My problem is:
> On my sge master host A, I want to submit a job to
> run on an execution 
> host B, C, D, or E. I have a job script called
> 
> sge-job.sh, and I use "qsub sge-job.sh" to submit
> this job. In sge-job.sh file, It calls another
> script blast.sh which is the script to run a Blast
> job on the host whatever SGE selects. On execution
> host, I have a blast.sh for the Blast job.
> Therefore, I want to find the default PATH for
> putting the blash.sh in each execution host. So when
> SGE select host C to run sge-job.sh, then will
> automaticlly execute the blast.sh on host C without
> specify the full path of blast.sh in sge-job.sh
> file. and SGE will find it where is the blast.sh on
> host C and run it. This job will be run as
> "apachebody" which doesn't have a shell on these
> host B, C, D, and E. so I can not define the path in
> .cshrc file.
> 
> Thanks,
> 
> joyce
> 
> 
> 
> Rayson Ho wrote:
> 
> >>I don't want to specified the full path for
> sge-job.sh 
> >>file, So what is the default PATH for SGE to find
> this file. Because I 
> >>want find the location for these job files without
> specifying the full 
> >>PATH of the job file.
> >>    
> >>
> >
> >How about qsub `which sge-job.sh`
> >
> >If the location is in the search path ($PATH), then
> `which sge-job.sh` will
> >print the abs path.
> >
> >Rayson
> >
> >
> >
> >  
> >
> >>I hope my explaination is clear. Anyone can tell
> me this.
> >>By the way, I found 
>
>>/tmp/266.1.cbr.q:/usr/local/bin:/usr/ucb:/bin:/usr/bin.
> Is this the PATH?
> >>
> >>Thanks alot,
> >>
> >>Joyce
> >>
> >>    
> >>
>
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