[GE users] can't write script file [...]: Bad address

Sebastian Stark stark at tuebingen.mpg.de
Fri May 20 14:29:45 BST 2005


I get this "can't write script file" error from this users job. For other users
everything works fine. This problem came right after I moved to qmaster and the
sge installation and spool filesystem to another host so it seems to be related
to that fact.

Can someone give me a hint? What "address"?

This is N1GE6u3. Thanks

neckar ~ % qstat -j 44649
job_number:                 44649
exec_file:                  job_scripts/44649
submission_time:            Fri May 20 15:20:19 2005
owner:                      ong
uid:                        1807
group:                      fml
gid:                        370
sge_o_home:                 /fml/ag-raetsch/home/ong
sge_o_log_name:             ong
sge_o_path:                 /usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/games
sge_o_shell:                /bin/bash
sge_o_workdir:              /fml/ag-raetsch/home/ong/PythonCode/Guppy
sge_o_host:                 neckar
account:                    sge
cwd:                        /fml/ag-raetsch/home/ong/PythonCode/Guppy
path_aliases:               /tmp_mnt/ * * /,/.amd_mnt/yangtse/export/altai1/agbs/cluster/ * * /agbs/cluster/,/.amd_mnt/huangho/export/kwaid0/ * * /fml/ag-raetsch/
hard resource_list:         arch=lx24-x86,express=FALSE,h_stack=8192K,h_vmem=1G
mail_list:                  ong at neckar.kyb.local
notify:                     FALSE
job_name:                   blat_i386
jobshare:                   0
env_list:
job_args:                   /agbs/cluster/ong/Data/Fugu/Fugu_rubripes_masked_dna.fa,/agbs/cluster/ong/Data/Guppy/BlueTes1merged.fasta,-out=pslx,-dots=1,-tileSize=8,-minIdentity=70,/agbs/cluster/ong/BlatOut/BlueTes1merged.psl
script_file:                /fml/ag-raetsch/home/ong/bin/blat_i386
error reason    1:          can't write script file "job_scripts/44649" wrote only -1 of 178300 bytes: Bad address
                1:          can't write script file "job_scripts/44649" wrote only -1 of 178300 bytes: Bad address
                1:          can't write script file "job_scripts/44649" wrote only -1 of 178300 bytes: Bad address
                1:          can't write script file "job_scripts/44649" wrote only -1 of 178300 bytes: Bad address


-- 
Sebastian Stark -- http://www.kyb.tuebingen.mpg.de/~stark
Max Planck Institute for Biological Cybernetics
Spemannstr. 38, 72076 Tuebingen
Phone: +49 7071 601 555 -- Fax: +49 7071 601 552

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