[GE users] qsub does not run my bash file
Mark.Olesen at arvinmeritor.com
Fri Apr 21 09:08:55 BST 2006
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When you create a queue, SGE unfortunately seems to use 'csh' as the default
shell for the queue. Check the entry 'shell' using qconf -sq <queuename> and
modify it using 'qconf -mq' to be /bin/sh.
While you are at it, you may also wish to add bash as a login_shell using
'qconf -mconf', otherwise you may or may not see your ~/.profile being
> I got an error:
> [mex at clusun subfile]$ more ~/prova.sh.e20056
> basepath=/export/home/mex/BoTSched: Command not found.
> basepath: Undefined variable.
To ensure that the standard bourne shell is used, you can *additionally* add
'-S /bin/sh' to $SGE_ROOT/$SGE_CELL/common/sge_request
Perhaps the default for new queues could/should be the standard bourne
> [mex at clusun subfile]$ more ~/prova.sh.o20056
> Warning: no access to tty (Bad file descriptor).
> Thus no job control in this shell.
You may wish to protect certain elements in your ~/.profile, ~/.bashrc, etc.
/usr/bin/tty -s 2>/dev/null # interactive shell
if [ $? -eq 0 ]; then
stty intr "^C"
for i in $HOME/.aliases $HOME/.aliases.group $HOME/.aliases.user
[ -r $i ] && . $i
Dr. Mark Olesen
Principal Engineer Thermofluids Analysis
ArvinMeritor Light Vehicle Systems
ArvinMeritor Emissions Technologies GmbH
D-86154 Augsburg, GERMANY
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