[GE users] list of jobs submitted to a queue

Jinal Jhaveri jajhaveri at lbl.gov
Fri Apr 28 19:25:14 BST 2006


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Is there anyway to list the jobs that are running or queued(qw/hqw) and 
that were submitted to lets say a queue named "annot-1"


qstat -q annot-1 doesn't work the way I thought. It shows me all the 
jobs running in that queue and waiting but it also shows jobs that are 
waiting and had a different queue name.

As shown in the e.g below, the jobs belonging to user eszeto were 
actually sent to a different queue.


 >qstat -q annot-1

job-ID  prior   name       user         state submit/start at     
queue                          slots ja-task-ID
-----------------------------------------------------------------------------------------------------------------
2081079 0.55500 Thaps3_tes rotillar     r     04/27/2006 20:24:19 
annot-3 at bimini.jgi-psf.org         1       
2036533 0.55500 xavaNewOld eszeto       qw    04/23/2006 
17:58:36                                    1       
2036534 0.55500 xavaNewOld eszeto       qw    04/23/2006 
17:58:37                                    1       
2036535 0.55500 xavaNewOld eszeto       qw    04/23/2006 
17:58:37                                    1       
2036536 0.55500 xavaNewOld eszeto       qw    04/23/2006 
17:58:37                                    1       
2036537 0.55500 xavaNewOld eszeto       qw    04/23/2006 
17:58:37                                    1       
2036538 0.55500 xavaNewOld eszeto       qw    04/23/2006 
17:58:37                                    1       
2036539 0.55500 xavaNewOld eszeto       qw    04/23/2006 
17:58:37                                    1       
2036540 0.55500 xavaNewOld eszeto       qw    04/23/2006 
17:58:37                                    1       
2036541 0.55500 xavaNewOld eszeto       qw    04/23/2006 
17:58:37                                    1       
2036542 0.55500 xavaNewOld eszeto       qw    04/23/2006 
17:58:38                                    1       
2036543 0.55500 xavaNewOld eszeto       qw    04/23/2006 
17:58:38                                    1       
2036544 0.55500 xavaNewOld eszeto       qw    04/23/2006 
17:58:38                                    1       
2036545 0.55500 xavaNewOld eszeto       qw    04/23/2006 
17:58:38                                    1       
2036546 0.55500 xavaNewOld eszeto       qw    04/23/2006 
17:58:38                                    1       
2036547 0.55500 xavaNewOld eszeto       qw    04/23/2006 
17:58:38                                    1       
2036548 0.55500 xavaNewOld eszeto       qw    04/23/2006 
17:58:38                                    1       
2036549 0.55500 xavaNewOld eszeto       qw    04/23/2006 
17:58:39                                    1       
2036550 0.55500 xavaNewOld eszeto       qw    04/23/2006 
17:58:39                                    1       
2036551 0.55500 xavaNewOld eszeto       qw    04/23/2006 
17:58:39                                    1       
2036552 0.55500 xavaNewOld eszeto       qw    04/23/2006 
17:58:39                                    1       
2036553 0.55500 xavaNewOld eszeto       qw    04/23/2006 
17:58:39                                    1       
2036554 0.55500 xavaNewOld eszeto       qw    04/23/2006 
17:58:39                                    1       
2036555 0.55500 xavaNewOld eszeto       qw    04/23/2006 
17:58:39                                    1       
2036556 0.55500 xavaNewOld eszeto       qw    04/23/2006 
17:58:40                                    1       
2036557 0.55500 xavaNewOld eszeto       qw    04/23/2006 
17:58:40                                    1       
2036558 0.55500 xavaNewOld eszeto       qw    04/23/2006 
17:58:40                                    1       
2036559 0.55500 xavaNewOld eszeto       qw    04/23/2006 
17:58:40                                    1       
2036560 0.55500 xavaNewOld eszeto       qw    04/23/2006 
17:58:40                                    1       
2036561 0.55500 xavaNewOld eszeto       qw    04/23/2006 
17:58:40                                    1       
2036562 0.55500 xavaNewOld eszeto       qw    04/23/2006 
17:58:40                                    1       
2051879 0.55500 interpro_a brubaker     qw    04/25/2006 
10:31:28                                    1 1119-54944:1
2081080 0.00000 Thaps3_tes rotillar     hqw   04/27/2006 
16:08:18                                    1       
2081081 0.00000 Thaps3_tes rotillar     hqw   04/27/2006 
16:08:18                                    1       
2081082 0.00000 Thaps3_tes rotillar     hqw   04/27/2006 
16:08:18                                    1      

 > qstat -j 2036533
job_number:                 2036533
exec_file:                  job_scripts/2036533
submission_time:            Sun Apr 23 17:58:36 2006
owner:                      eszeto
uid:                        2691
group:                      genome
gid:                        124
sge_o_home:                 /home/eszeto
sge_o_log_name:             eszeto
sge_o_path:                 
.:/home/img/eszeto/img_dev/dataLoad/bin:/home/img/eszeto/img_dev/dataLoad/bin/i686-linux:.:/home/condor/condor/bin:/sge/bin/lx24-amd64:.:/home/eszeto/bin:/home/eszeto/bin/i686-linux:/usr/local/bin:/usr/local/mysql/bin:/usr/local/j2se/bin:/usr/production/bin:/usr/bin:/bin:/sbin:/usr/sbin:/usr/ccs:/usr/ucb:/usr/bin:/usr/openwin/bin:/usr/openwin/bin/xview:/home/ppace/bin:/etc:/sybase/bin://usr/budtool/bin:/home/analysis/bin:/usr/local/oracle/product/9.0.1/bin:/usr/local/wu-blast:/usr/local/ant/bin:/usr/local/teiresias/bin:/home/eszeto/fgenesb:/home/img/eszeto/arb/bin
sge_o_shell:                /bin/tcsh
sge_o_workdir:              
/home/img/eszeto/dataLoad/data/add/avaNewOldBatches.cmds
sge_o_host:                 node64t-00
account:                    sge
stderr_path_list:           
/home/img/eszeto/img_dev/dataLoad/data/add/avaNewOldBatches.cmds/xavaNewOldBatches.list.txt.121.csh.stderr
hard resource_list:         arch=lx24-amd64
mail_list:                  eszeto at node64t-00.jgi-psf.org
notify:                     FALSE
job_name:                   xavaNewOldBatches.list.txt.121.csh
stdout_path_list:           
/home/img/eszeto/img_dev/dataLoad/data/add/avaNewOldBatches.cmds/xavaNewOldBatches.list.txt.121.csh.stdout
jobshare:                   0
hard_queue_list:            all.q,img-low
env_list:                  
script_file:                
/home/img/eszeto/img_dev/dataLoad/data/add/avaNewOldBatches.cmds/xavaNewOldBatches.list.txt.121.csh
scheduling info:            (Collecting of scheduler job information is 
turned off)



I can imagine this might be happening because of the way sge schedules 
the jobs, but I thought it would be useful to have something where you 
can know what all jobs(running/queued) are submitted to a queue.

lis

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