[GE users] Problems with LAM tight integration

Christian Fernandez cfernandez at voicesignal.com
Mon Aug 7 22:16:46 BST 2006


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one of my users is reporting:

HOSTTYPE: Undefined variable.

I had him run the test script from sge and that runs just fine...
but when he runs his own script it does not.
I bet this is something simple. can someone point me in the right direction?

Thanks.


slaton wrote:
> Holy cow! That was it. I don't really understand why, but resetting 
> rsh_command to undefined has solved this problem. No more "-n" inserted 
> into the qrsh option list.
>
> Reuti, many thanks for your help through this belabored debugging process.
>
> best
> slaton
>
> Slaton Lipscomb
> Nogales Lab, Howard Hughes Medical Institute
> http://cryoem.berkeley.edu
>
> On Mon, 7 Aug 2006, slaton wrote:
>
>   
>>> did you define a different rsh_command in the SGE configuration 
>>> besides the default (not to appear there at all)? - Reuti
>>>       
>> I thought i'd set it to /usr/bin/rsh, but i just checked and there's no 
>> full path set:
>>
>> # qconf -sconf | grep rsh
>> rsh_command                  rsh
>>
>> I have only a global configuration for this cluster, since it is 
>> homogeneous.
>>
>> thanks
>> slaton
>>     
>
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