[GE users] How to use SGE commands inside a script?

Goncalo Borges goncalo at lip.pt
Mon Jan 30 19:27:38 GMT 2006


Hello everybody,
I have seen that you can give options to the "qsub" command inside a bash 
script (Ex: #$ -s /bin/sh").

I'm trying to implement a load sensor which disables a queue instance when 
the jobs in that queue are consuming a lot of virtual memory. Is it 
possible to perform a "qmod -d <queue>" inside the load sensor bash 
script? Does it needed some kind of special syntax, as in the qsub 
command? 

Thanks in advance
Goncalo



On Mon, 30 Jan 2006, Brady Catherman wrote:

> If you are ever in the middle of nowhere (Moscow, ID) stop by! I will buy you
> a beer =)
> 
> That seems to have worked great! I will know much better when the rest of the
> system gets up and running though. All the SGE tools work great on the head
> node!
> 
> 
> 
> On Jan 30, 2006, at 10:32 AM, Ron Chen wrote:
> 
> > Yup, this is the problem.
> > 
> > If you compile SGE on LinuxPPC as 64-bit, then you will need to
> > change aimk:
> > 
> > case "lx26-ppc":
> >    set BUILDARCH = LINUXPPC
> >    set COMPILE_ARCH = LINUXPPC_26
> >    set TARGET_BITS = TARGET_32BIT
> > 
> > Set "TARGET_BITS" to TARGET_64BIT
> > 
> > Or, you can add -m32 to force gcc to generate 32-bit binaries.
> > 
> >  -Ron
> > 
> > 
> > --- Brady Catherman <bradyc at uidaho.edu> wrote:
> > > file sge_qmaster
> > > sge_qmaster: ELF 64-bit MSB executable, cisco 7500, version 1
> > > (SYSV),
> > > for GNU/Linux 2.4.19, dynamically linked (uses shared libs),
> > > for GNU/
> > > Linux 2.4.19, stripped
> > > 
> > > uname -a
> > > Linux io01.bw01.ibest.uidaho.edu 2.6.14-gentoo-r7 #7 SMP Fri
> > > Jan 20
> > > 09:07:19 PST 2006 ppc64 PPC970FX, altivec supported RackMac3,1
> > > GNU/Linux
> > > 
> > > I can't compile using ./aimk -32 though because it claims that
> > > -32
> > > isn't supported with lx26-ppc.
> > > 
> > > Any thoughts?
> > > 
> > > 
> > > 
> > > 
> > > On Jan 30, 2006, at 8:50 AM, Rayson Ho wrote:
> > > 
> > > > Did you compile SGE as 64-bit?? Can you find out whether SGE
> > > is
> > > > compiled as 32-bit or 64-bit:
> > > > 
> > > > % file <path>/sge_qmaster
> > > > 
> > > > I used to get it working on a 64-bit PPC Linux machine with
> > > 32-bit SGE
> > > > binaries...
> > > > 
> > > > Rayson
> > > > 
> > > > 
> > > > 
> > > > On 1/30/06, Brady Catherman <bradyc at uidaho.edu> wrote:
> > > > > 
> > > > > Thats why I am asking about compilation. This is the same
> > > install on
> > > > > the same box. The scheduler can not talk to the qmaster
> > > when started
> > > > > using the install_qmaster script.
> > > > > 
> > > > > Does anybody have SGE working on a full 64 bit version of
> > > PPC linux?
> > > > > If so, what where your exact compile options in order to
> > > get it
> > > > > installed? Was any tweaking necessary? And what version are
> > > you
> > > > > running?
> > > > > 
> > > > > I am about to try 6.0u6 again just to see if I can get it
> > > working..
> > > > > 
> > > > > 
> > > > > On Jan 30, 2006, at 12:20 AM, Stephan Grell - Sun Germany -
> > > SSG -
> > > > > Software Engineer wrote:
> > > > > 
> > > > > > Hi,
> > > > > > 
> > > > > > the messages mean,that you have mixed different SGE
> > > versions or
> > > > > > something
> > > > > > went wrong during the compilation. the "cull version"
> > > needs to be
> > > > > > the same
> > > > > > amoung all clients.
> > > > > > 
> > > > > > It looks as if the master is a u7 and the scheduler
> > > something else.
> > > > > > 
> > > > > > Cheers,
> > > > > > Stephan
> > > > > > 
> > > > > > Brady Catherman wrote On 01/29/06 22:47,:
> > > > > > 
> > > > > > > After compiling grid engine on a Linux PPC system with
> > > 64bit
> > > > > > > kernel/
> > > > > > > libraries I can't seem to get anything to talk to the
> > > qmaster.. The
> > > > > > > only errors that are spit out are:
> > > > > > > 
> > > > > > > 01/29/2006 13:47:21|qmaster|io01|E|wrong cull version,
> > > read
> > > > > > > 0x00000000, but expected actual version 0x10020000
> > > > > > > 01/29/2006 13:47:21|qmaster|io01|E|error unpacking gdi
> > > request:
> > > > > > > wrong
> > > > > > > cull version
> > > > > > > 01/29/2006 13:48:25|qmaster|io01|E|wrong cull version,
> > > read
> > > > > > > 0x00000000, but expected actual version 0x10020000
> > > > > > > 01/29/2006 13:48:25|qmaster|io01|E|error unpacking gdi
> > > request:
> > > > > > > wrong
> > > > > > > cull version
> > > > > > > 01/29/2006 13:49:29|qmaster|io01|E|wrong cull version,
> > > read
> > > > > > > 0x00000000, but expected actual version 0x10020000
> > > > > > > 01/29/2006 13:49:29|qmaster|io01|E|error unpacking gdi
> > > request:
> > > > > > > wrong
> > > > > > > cull version
> > > > > > > 01/29/2006 13:50:33|qmaster|io01|E|wrong cull version,
> > > read
> > > > > > > 0x00000000, but expected actual version 0x10020000
> > > > > > > 01/29/2006 13:50:33|qmaster|io01|E|error unpacking gdi
> > > request:
> > > > > > > wrong
> > > > > > > cull version
> > > > > > > 01/29/2006 13:51:39|qmaster|io01|E|wrong cull version,
> > > read
> > > > > > > 0x00000000, but expected actual version 0x10020000
> > > > > > > 01/29/2006 13:51:39|qmaster|io01|E|error unpacking gdi
> > > request:
> > > > > > > wrong
> > > > > > > cull version
> > > > > > > 
> > > > > > > Anybody got any clue what could be causing this?
> > > > > > > 
> > > > > > > 
> > > 
> > -------------------------------------------------------------------
> > > 
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