[GE users] list of jobs submitted to a queue

Simon Gao gao at schrodinger.com
Wed Jun 14 19:56:13 BST 2006


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Any updates on this issue?

I am also interested in knowing how many jobs in wait queue are
submitted for which queue to run.

Simon


Reuti wrote:
> Am 01.05.2006 um 21:40 schrieb Jinal Jhaveri:
>
>>
>>
>>
>>> qstat -l qname=annot-3
>>>
>> Thanks Reuti, but this doesn't work in 6u6. The list of running jobs
>> is correct but in addition to that this command also displays jobs
>> that didn't have resource qname = annot-3
>
> Mmh - this is a point to discuss, whether it's a bug. I mean: "qstat
> -q ..." should list all jobs eligible to run in this queue, but "-l
> qname=" should list only jobs requesting this feature?
>
> -- Reuti
>
>
>>
>>
>>
>>> HTH - Reuti
>>>
>>>
>>>> As shown in the e.g below, the jobs belonging to user eszeto were 
>>>> actually sent to a different queue.
>>>>
>>>>
>>>> >qstat -q annot-1
>>>>
>>>> job-ID  prior   name       user         state submit/start at     
>>>> queue                          slots ja-task-ID
>>>> ----------------------------------------------------------------------
>>>> -------------------------------------------
>>>> 2081079 0.55500 Thaps3_tes rotillar     r     04/27/2006 20:24:19 
>>>> annot-3 at bimini.jgi-psf.org         1       2036533 0.55500 
>>>> xavaNewOld eszeto       qw    04/23/2006 
>>>> 17:58:36                                    1       2036534
>>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006 
>>>> 17:58:37                                    1       2036535
>>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006 
>>>> 17:58:37                                    1       2036536
>>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006 
>>>> 17:58:37                                    1       2036537
>>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006 
>>>> 17:58:37                                    1       2036538
>>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006 
>>>> 17:58:37                                    1       2036539
>>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006 
>>>> 17:58:37                                    1       2036540
>>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006 
>>>> 17:58:37                                    1       2036541
>>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006 
>>>> 17:58:37                                    1       2036542
>>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006 
>>>> 17:58:38                                    1       2036543
>>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006 
>>>> 17:58:38                                    1       2036544
>>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006 
>>>> 17:58:38                                    1       2036545
>>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006 
>>>> 17:58:38                                    1       2036546
>>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006 
>>>> 17:58:38                                    1       2036547
>>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006 
>>>> 17:58:38                                    1       2036548
>>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006 
>>>> 17:58:38                                    1       2036549
>>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006 
>>>> 17:58:39                                    1       2036550
>>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006 
>>>> 17:58:39                                    1       2036551
>>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006 
>>>> 17:58:39                                    1       2036552
>>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006 
>>>> 17:58:39                                    1       2036553
>>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006 
>>>> 17:58:39                                    1       2036554
>>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006 
>>>> 17:58:39                                    1       2036555
>>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006 
>>>> 17:58:39                                    1       2036556
>>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006 
>>>> 17:58:40                                    1       2036557
>>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006 
>>>> 17:58:40                                    1       2036558
>>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006 
>>>> 17:58:40                                    1       2036559
>>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006 
>>>> 17:58:40                                    1       2036560
>>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006 
>>>> 17:58:40                                    1       2036561
>>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006 
>>>> 17:58:40                                    1       2036562
>>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006 
>>>> 17:58:40                                    1       2051879
>>>> 0.55500  interpro_a brubaker     qw    04/25/2006 
>>>> 10:31:28                                    1 1119-54944:1
>>>> 2081080 0.00000 Thaps3_tes rotillar     hqw   04/27/2006 
>>>> 16:08:18                                    1       2081081
>>>> 0.00000  Thaps3_tes rotillar     hqw   04/27/2006 
>>>> 16:08:18                                    1       2081082
>>>> 0.00000  Thaps3_tes rotillar     hqw   04/27/2006 
>>>> 16:08:18                                    1
>>>> > qstat -j 2036533
>>>> job_number:                 2036533
>>>> exec_file:                  job_scripts/2036533
>>>> submission_time:            Sun Apr 23 17:58:36 2006
>>>> owner:                      eszeto
>>>> uid:                        2691
>>>> group:                      genome
>>>> gid:                        124
>>>> sge_o_home:                 /home/eszeto
>>>> sge_o_log_name:             eszeto
>>>> sge_o_path:                 .:/home/img/eszeto/img_dev/dataLoad/
>>>> bin:/home/img/eszeto/img_dev/dataLoad/bin/i686-linux:.:/home/condor/
>>>> condor/bin:/sge/bin/lx24-amd64:.:/home/eszeto/bin:/home/eszeto/bin/
>>>> i686-linux:/usr/local/bin:/usr/local/mysql/bin:/usr/local/j2se/bin:/
>>>> usr/production/bin:/usr/bin:/bin:/sbin:/usr/sbin:/usr/ccs:/usr/ucb:/
>>>> usr/bin:/usr/openwin/bin:/usr/openwin/bin/xview:/home/ppace/bin:/
>>>> etc:/sybase/bin://usr/budtool/bin:/home/analysis/bin:/usr/local/
>>>> oracle/product/9.0.1/bin:/usr/local/wu-blast:/usr/local/ant/bin:/
>>>> usr/local/teiresias/bin:/home/eszeto/fgenesb:/home/img/eszeto/arb/bin
>>>> sge_o_shell:                /bin/tcsh
>>>> sge_o_workdir:              /home/img/eszeto/dataLoad/data/add/
>>>> avaNewOldBatches.cmds
>>>> sge_o_host:                 node64t-00
>>>> account:                    sge
>>>> stderr_path_list:           /home/img/eszeto/img_dev/dataLoad/data/
>>>> add/avaNewOldBatches.cmds/xavaNewOldBatches.list.txt.121.csh.stderr
>>>> hard resource_list:         arch=lx24-amd64
>>>> mail_list:                  eszeto at node64t-00.jgi-psf.org
>>>> notify:                     FALSE
>>>> job_name:                   xavaNewOldBatches.list.txt.121.csh
>>>> stdout_path_list:           /home/img/eszeto/img_dev/dataLoad/data/
>>>> add/avaNewOldBatches.cmds/xavaNewOldBatches.list.txt.121.csh.stdout
>>>> jobshare:                   0
>>>> hard_queue_list:            all.q,img-low
>>>> env_list:                  script_file:                /home/img/
>>>> eszeto/img_dev/dataLoad/data/add/avaNewOldBatches.cmds/
>>>> xavaNewOldBatches.list.txt.121.csh
>>>> scheduling info:            (Collecting of scheduler job 
>>>> information is turned off)
>>>>
>>>>
>>>>
>>>> I can imagine this might be happening because of the way sge 
>>>> schedules the jobs, but I thought it would be useful to have 
>>>> something where you can know what all jobs(running/queued) are 
>>>> submitted to a queue.
>>>>
>>>> lis
>>>>
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>>>
>>>
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