[GE users] Cleaning scratch files.

Rayson Ho rayrayson at gmail.com
Wed Jun 28 23:58:29 BST 2006


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AFAIK, the prolog & epilog are only run on the first node, even for
tight PE integration...

Rayson




On 6/28/06, Craig Tierney <ctierney at hypermall.net> wrote:
> Baudilio Tejerina wrote:
> > Hi,
> >
> > If in a parallel job, where several scratch files are created in the
> > respective local-node disks, the job is deleted (qdel), the scratch
> > files remain there. Is there any way to have 'sge' taking care of them
> > (automatically removed them)?
> >
> > I've tried by inserting the appropriate 'rm' statement in the executing
> > script but, these only work if the jobs successfully finish, obviously.
> >
>
> Add the rm statement in the job prologue.  That is guaranteed to run
> before every job, and and clean up the tmp space if there are stale files.
>
> Craig
>
>
> > Thanks for any help anyone might bring.
> >
> > Regards.
> >
> > Baudilio
> >
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