[GE globus] Grid Engine and GT4

Melvin Koh melvin at apstc.sun.com.sg
Fri Jun 30 04:34:07 BST 2006


Hi,

This may not be it, but I just want to make sure. Have you set both
reporting=true and joblog=true using GE's "qconf -mconf" command?


On Thu, 29 Jun 2006, Otheus (aka Timothy J. Shelling) wrote:

> Greetings from Innsbruck, Austria,
> 
> I've also been assigned to the task of getting SGE to work with Globus GT4,
> and like Diego Bello, I have run into troubles in GT 4.0.2.  My problems
> appear to be almost identical, yet not quite.
> 
> First, the symptoms. I'm trying to submit a basic job on the host which is
> the SGE submission host and the host running the GT4 container.
> 
> $ globusrun-ws -submit -factory $HOSTNAME -Ft SGE -c -- /usr/bin/printenv
> Submitting job...Done.
> Job ID: uuid:718d3368-07a9-11db-b935-000423c068ae
> Termination time: 06/30/2006 19:57 GMT
> <after waiting for 5 minutes>
> Current job state: Unsubmitted
> <hit ctrl-c>
> Canceling...Canceled.
> Destroying job...Done.
> globusrun-ws: Operation was canceled
> $
> 
> >From what I can tell, the job is being created AND submitted (and run, etc).
> HOWEVER, the reporting appears to not be properly parsed or something.
> Here's the tail of the reporting file:
> 
> 1151613380:queue_consumable:all.q:k10:1151613380::slots=1.000000=8.000000
> 1151613383:acct:
> all.q:k10:dps:otheus:sge_job_script.8006:672:sge:0:1151613373:11
> 51613382:1151613382:0:0:0:0:0:0.000000:0:0:0:0:9402:0:0:0.000000
> :0:0:0:0:524:89:
> NONE:defaultdepartment:NONE:1:0:0.000000:0.000000:0.000000:-U dps_users:
> 0.000000
> :NONE:0.000000
> 1151613383:queue_consumable:all.q:k10:1151613383::slots=0.000000=8.000000
> 
> 
> Now, I only got this far once I made sure that the sge.pm file was setting
> the SGE_* environment variables properly.  I also followed another piece of
> advice in altering the JobManager.pm module to output the log to /tmp.
> Here's what I found in the other logs:
> 
> Thu Jun 29 22:07:55 2006 JM_SCRIPT:   script location:
> /home/otheus/.globus/ef2c0c96-07aa-11db-9dc2-000423c068ae/sge_job_script.750
> Thu Jun 29 22:07:55 2006 JM_SCRIPT:   email(s) will not be sent
> Thu Jun 29 22:07:55 2006 JM_SCRIPT: Checking project details
> Thu Jun 29 22:07:55 2006 JM_SCRIPT:   Project not specified
> Thu Jun 29 22:07:55 2006 JM_SCRIPT: Determining job type
> Thu Jun 29 22:07:55 2006 JM_SCRIPT:   Job is of type multiple
> Thu Jun 29 22:07:55 2006 JM_SCRIPT:   forking multiple requests
> Thu Jun 29 22:07:55 2006 JM_SCRIPT: SGE job script successfully built! :-)
> Thu Jun 29 22:07:55 2006 JM_SCRIPT: Submitting a job
> Thu Jun 29 22:07:55 2006 JM_SCRIPT:   successfully submitted
> 
> And that's it until I interrupt globusrun-ws.
> 
> Finally, there's container.log. And *This* contains something the previous
> thread discussed but did not follow up on: missing
> "globus-scheduler-provider-sge". Indeed I don't have one. But to my
> knowledge, I am not trying to submit via MDS. So why is this even appearing?
> 
> 2006-06-29 22:12:49,124 WARN  usefulrp.GLUEResourceProperty [GLUE refresher
> 0,runScript:315] Script Execution error when executing shell
> /software/globus/gt4.0.2/libexec/globus-scheduler-provider-sge
> java.io.IOException: java.io.IOException:
> /software/globus/gt4.0.2/libexec/globus-scheduler-provider-sge: not found
>         at java.lang.UNIXProcess.<init>(UNIXProcess.java:148)
>         at java.lang.ProcessImpl.start(ProcessImpl.java:65)
>         at java.lang.ProcessBuilder.start(ProcessBuilder.java:451)
>         at java.lang.Runtime.exec(Runtime.java:591)
>         at java.lang.Runtime.exec(Runtime.java:429)
>         at java.lang.Runtime.exec(Runtime.java:326)
>         at
> org.globus.mds.usefulrp.GLUEResourceProperty$PeriodicExecutor.runScript(
> GLUEResourceProperty.java:299)
>         at org.globus.mds.usefulrp.GLUEResourceProperty$PeriodicExecutor.run
> (GLUEResourceProperty.java:260)
>         at java.lang.Thread.run(Thread.java:595)
> 
> That's all I have. Ideas? Suggestions?
> 
> 

-- 
-----------------------------------------
Melvin Koh Chee Kian
Grid Research Engineer
Asia Pacific Science & Technology Center
Sun Microsystems Inc.
Website: http://apstc.sun.com.sg/
-----------------------------------------



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