[GE users] list of jobs submitted to a queue

Jinal Jhaveri JAJhaveri at lbl.gov
Mon May 1 20:40:53 BST 2006


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> qstat -l qname=annot-3
>
Thanks Reuti, but this doesn't work in 6u6. The list of running jobs is 
correct but in addition to that this command also displays jobs that 
didn't have resource qname = annot-3




> HTH - Reuti
>
>
>> As shown in the e.g below, the jobs belonging to user eszeto were  
>> actually sent to a different queue.
>>
>>
>> >qstat -q annot-1
>>
>> job-ID  prior   name       user         state submit/start at      
>> queue                          slots ja-task-ID
>> ---------------------------------------------------------------------- 
>> -------------------------------------------
>> 2081079 0.55500 Thaps3_tes rotillar     r     04/27/2006 20:24:19  
>> annot-3 at bimini.jgi-psf.org         1       2036533 0.55500  
>> xavaNewOld eszeto       qw    04/23/2006  
>> 17:58:36                                    1       2036534 0.55500  
>> xavaNewOld eszeto       qw    04/23/2006  
>> 17:58:37                                    1       2036535 0.55500  
>> xavaNewOld eszeto       qw    04/23/2006  
>> 17:58:37                                    1       2036536 0.55500  
>> xavaNewOld eszeto       qw    04/23/2006  
>> 17:58:37                                    1       2036537 0.55500  
>> xavaNewOld eszeto       qw    04/23/2006  
>> 17:58:37                                    1       2036538 0.55500  
>> xavaNewOld eszeto       qw    04/23/2006  
>> 17:58:37                                    1       2036539 0.55500  
>> xavaNewOld eszeto       qw    04/23/2006  
>> 17:58:37                                    1       2036540 0.55500  
>> xavaNewOld eszeto       qw    04/23/2006  
>> 17:58:37                                    1       2036541 0.55500  
>> xavaNewOld eszeto       qw    04/23/2006  
>> 17:58:37                                    1       2036542 0.55500  
>> xavaNewOld eszeto       qw    04/23/2006  
>> 17:58:38                                    1       2036543 0.55500  
>> xavaNewOld eszeto       qw    04/23/2006  
>> 17:58:38                                    1       2036544 0.55500  
>> xavaNewOld eszeto       qw    04/23/2006  
>> 17:58:38                                    1       2036545 0.55500  
>> xavaNewOld eszeto       qw    04/23/2006  
>> 17:58:38                                    1       2036546 0.55500  
>> xavaNewOld eszeto       qw    04/23/2006  
>> 17:58:38                                    1       2036547 0.55500  
>> xavaNewOld eszeto       qw    04/23/2006  
>> 17:58:38                                    1       2036548 0.55500  
>> xavaNewOld eszeto       qw    04/23/2006  
>> 17:58:38                                    1       2036549 0.55500  
>> xavaNewOld eszeto       qw    04/23/2006  
>> 17:58:39                                    1       2036550 0.55500  
>> xavaNewOld eszeto       qw    04/23/2006  
>> 17:58:39                                    1       2036551 0.55500  
>> xavaNewOld eszeto       qw    04/23/2006  
>> 17:58:39                                    1       2036552 0.55500  
>> xavaNewOld eszeto       qw    04/23/2006  
>> 17:58:39                                    1       2036553 0.55500  
>> xavaNewOld eszeto       qw    04/23/2006  
>> 17:58:39                                    1       2036554 0.55500  
>> xavaNewOld eszeto       qw    04/23/2006  
>> 17:58:39                                    1       2036555 0.55500  
>> xavaNewOld eszeto       qw    04/23/2006  
>> 17:58:39                                    1       2036556 0.55500  
>> xavaNewOld eszeto       qw    04/23/2006  
>> 17:58:40                                    1       2036557 0.55500  
>> xavaNewOld eszeto       qw    04/23/2006  
>> 17:58:40                                    1       2036558 0.55500  
>> xavaNewOld eszeto       qw    04/23/2006  
>> 17:58:40                                    1       2036559 0.55500  
>> xavaNewOld eszeto       qw    04/23/2006  
>> 17:58:40                                    1       2036560 0.55500  
>> xavaNewOld eszeto       qw    04/23/2006  
>> 17:58:40                                    1       2036561 0.55500  
>> xavaNewOld eszeto       qw    04/23/2006  
>> 17:58:40                                    1       2036562 0.55500  
>> xavaNewOld eszeto       qw    04/23/2006  
>> 17:58:40                                    1       2051879 0.55500  
>> interpro_a brubaker     qw    04/25/2006  
>> 10:31:28                                    1 1119-54944:1
>> 2081080 0.00000 Thaps3_tes rotillar     hqw   04/27/2006  
>> 16:08:18                                    1       2081081 0.00000  
>> Thaps3_tes rotillar     hqw   04/27/2006  
>> 16:08:18                                    1       2081082 0.00000  
>> Thaps3_tes rotillar     hqw   04/27/2006  
>> 16:08:18                                    1
>> > qstat -j 2036533
>> job_number:                 2036533
>> exec_file:                  job_scripts/2036533
>> submission_time:            Sun Apr 23 17:58:36 2006
>> owner:                      eszeto
>> uid:                        2691
>> group:                      genome
>> gid:                        124
>> sge_o_home:                 /home/eszeto
>> sge_o_log_name:             eszeto
>> sge_o_path:                 .:/home/img/eszeto/img_dev/dataLoad/ 
>> bin:/home/img/eszeto/img_dev/dataLoad/bin/i686-linux:.:/home/condor/ 
>> condor/bin:/sge/bin/lx24-amd64:.:/home/eszeto/bin:/home/eszeto/bin/ 
>> i686-linux:/usr/local/bin:/usr/local/mysql/bin:/usr/local/j2se/bin:/ 
>> usr/production/bin:/usr/bin:/bin:/sbin:/usr/sbin:/usr/ccs:/usr/ucb:/ 
>> usr/bin:/usr/openwin/bin:/usr/openwin/bin/xview:/home/ppace/bin:/ 
>> etc:/sybase/bin://usr/budtool/bin:/home/analysis/bin:/usr/local/ 
>> oracle/product/9.0.1/bin:/usr/local/wu-blast:/usr/local/ant/bin:/ 
>> usr/local/teiresias/bin:/home/eszeto/fgenesb:/home/img/eszeto/arb/bin
>> sge_o_shell:                /bin/tcsh
>> sge_o_workdir:              /home/img/eszeto/dataLoad/data/add/ 
>> avaNewOldBatches.cmds
>> sge_o_host:                 node64t-00
>> account:                    sge
>> stderr_path_list:           /home/img/eszeto/img_dev/dataLoad/data/ 
>> add/avaNewOldBatches.cmds/xavaNewOldBatches.list.txt.121.csh.stderr
>> hard resource_list:         arch=lx24-amd64
>> mail_list:                  eszeto at node64t-00.jgi-psf.org
>> notify:                     FALSE
>> job_name:                   xavaNewOldBatches.list.txt.121.csh
>> stdout_path_list:           /home/img/eszeto/img_dev/dataLoad/data/ 
>> add/avaNewOldBatches.cmds/xavaNewOldBatches.list.txt.121.csh.stdout
>> jobshare:                   0
>> hard_queue_list:            all.q,img-low
>> env_list:                  script_file:                /home/img/ 
>> eszeto/img_dev/dataLoad/data/add/avaNewOldBatches.cmds/ 
>> xavaNewOldBatches.list.txt.121.csh
>> scheduling info:            (Collecting of scheduler job  information 
>> is turned off)
>>
>>
>>
>> I can imagine this might be happening because of the way sge  
>> schedules the jobs, but I thought it would be useful to have  
>> something where you can know what all jobs(running/queued) are  
>> submitted to a queue.
>>
>> lis
>>
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