[GE users] list of jobs submitted to a queue

Reuti reuti at staff.uni-marburg.de
Mon May 1 21:27:39 BST 2006


Am 01.05.2006 um 21:40 schrieb Jinal Jhaveri:

>
>
>
>> qstat -l qname=annot-3
>>
> Thanks Reuti, but this doesn't work in 6u6. The list of running  
> jobs is correct but in addition to that this command also displays  
> jobs that didn't have resource qname = annot-3

Mmh - this is a point to discuss, whether it's a bug. I mean: "qstat - 
q ..." should list all jobs eligible to run in this queue, but "-l  
qname=" should list only jobs requesting this feature?

-- Reuti


>
>
>
>> HTH - Reuti
>>
>>
>>> As shown in the e.g below, the jobs belonging to user eszeto  
>>> were  actually sent to a different queue.
>>>
>>>
>>> >qstat -q annot-1
>>>
>>> job-ID  prior   name       user         state submit/start  
>>> at      queue                          slots ja-task-ID
>>> -------------------------------------------------------------------- 
>>> -- -------------------------------------------
>>> 2081079 0.55500 Thaps3_tes rotillar     r     04/27/2006  
>>> 20:24:19  annot-3 at bimini.jgi-psf.org         1       2036533  
>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006   
>>> 17:58:36                                    1       2036534  
>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006   
>>> 17:58:37                                    1       2036535  
>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006   
>>> 17:58:37                                    1       2036536  
>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006   
>>> 17:58:37                                    1       2036537  
>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006   
>>> 17:58:37                                    1       2036538  
>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006   
>>> 17:58:37                                    1       2036539  
>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006   
>>> 17:58:37                                    1       2036540  
>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006   
>>> 17:58:37                                    1       2036541  
>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006   
>>> 17:58:37                                    1       2036542  
>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006   
>>> 17:58:38                                    1       2036543  
>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006   
>>> 17:58:38                                    1       2036544  
>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006   
>>> 17:58:38                                    1       2036545  
>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006   
>>> 17:58:38                                    1       2036546  
>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006   
>>> 17:58:38                                    1       2036547  
>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006   
>>> 17:58:38                                    1       2036548  
>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006   
>>> 17:58:38                                    1       2036549  
>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006   
>>> 17:58:39                                    1       2036550  
>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006   
>>> 17:58:39                                    1       2036551  
>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006   
>>> 17:58:39                                    1       2036552  
>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006   
>>> 17:58:39                                    1       2036553  
>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006   
>>> 17:58:39                                    1       2036554  
>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006   
>>> 17:58:39                                    1       2036555  
>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006   
>>> 17:58:39                                    1       2036556  
>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006   
>>> 17:58:40                                    1       2036557  
>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006   
>>> 17:58:40                                    1       2036558  
>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006   
>>> 17:58:40                                    1       2036559  
>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006   
>>> 17:58:40                                    1       2036560  
>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006   
>>> 17:58:40                                    1       2036561  
>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006   
>>> 17:58:40                                    1       2036562  
>>> 0.55500  xavaNewOld eszeto       qw    04/23/2006   
>>> 17:58:40                                    1       2051879  
>>> 0.55500  interpro_a brubaker     qw    04/25/2006   
>>> 10:31:28                                    1 1119-54944:1
>>> 2081080 0.00000 Thaps3_tes rotillar     hqw   04/27/2006   
>>> 16:08:18                                    1       2081081  
>>> 0.00000  Thaps3_tes rotillar     hqw   04/27/2006   
>>> 16:08:18                                    1       2081082  
>>> 0.00000  Thaps3_tes rotillar     hqw   04/27/2006   
>>> 16:08:18                                    1
>>> > qstat -j 2036533
>>> job_number:                 2036533
>>> exec_file:                  job_scripts/2036533
>>> submission_time:            Sun Apr 23 17:58:36 2006
>>> owner:                      eszeto
>>> uid:                        2691
>>> group:                      genome
>>> gid:                        124
>>> sge_o_home:                 /home/eszeto
>>> sge_o_log_name:             eszeto
>>> sge_o_path:                 .:/home/img/eszeto/img_dev/dataLoad/  
>>> bin:/home/img/eszeto/img_dev/dataLoad/bin/i686-linux:.:/home/ 
>>> condor/ condor/bin:/sge/bin/lx24-amd64:.:/home/eszeto/bin:/home/ 
>>> eszeto/bin/ i686-linux:/usr/local/bin:/usr/local/mysql/bin:/usr/ 
>>> local/j2se/bin:/ usr/production/bin:/usr/bin:/bin:/sbin:/usr/ 
>>> sbin:/usr/ccs:/usr/ucb:/ usr/bin:/usr/openwin/bin:/usr/openwin/ 
>>> bin/xview:/home/ppace/bin:/ etc:/sybase/bin://usr/budtool/bin:/ 
>>> home/analysis/bin:/usr/local/ oracle/product/9.0.1/bin:/usr/local/ 
>>> wu-blast:/usr/local/ant/bin:/ usr/local/teiresias/bin:/home/ 
>>> eszeto/fgenesb:/home/img/eszeto/arb/bin
>>> sge_o_shell:                /bin/tcsh
>>> sge_o_workdir:              /home/img/eszeto/dataLoad/data/add/  
>>> avaNewOldBatches.cmds
>>> sge_o_host:                 node64t-00
>>> account:                    sge
>>> stderr_path_list:           /home/img/eszeto/img_dev/dataLoad/ 
>>> data/ add/avaNewOldBatches.cmds/xavaNewOldBatches.list.txt. 
>>> 121.csh.stderr
>>> hard resource_list:         arch=lx24-amd64
>>> mail_list:                  eszeto at node64t-00.jgi-psf.org
>>> notify:                     FALSE
>>> job_name:                   xavaNewOldBatches.list.txt.121.csh
>>> stdout_path_list:           /home/img/eszeto/img_dev/dataLoad/ 
>>> data/ add/avaNewOldBatches.cmds/xavaNewOldBatches.list.txt. 
>>> 121.csh.stdout
>>> jobshare:                   0
>>> hard_queue_list:            all.q,img-low
>>> env_list:                  script_file:                /home/img/  
>>> eszeto/img_dev/dataLoad/data/add/avaNewOldBatches.cmds/  
>>> xavaNewOldBatches.list.txt.121.csh
>>> scheduling info:            (Collecting of scheduler job   
>>> information is turned off)
>>>
>>>
>>>
>>> I can imagine this might be happening because of the way sge   
>>> schedules the jobs, but I thought it would be useful to have   
>>> something where you can know what all jobs(running/queued) are   
>>> submitted to a queue.
>>>
>>> lis
>>>
>>> -------------------------------------------------------------------- 
>>> -
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>>
>>
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