[GE users] permissions on directories...

davide cittaro daweonline at gmail.com
Wed May 17 15:18:55 BST 2006


    [ The following text is in the "ISO-8859-1" character set. ]
    [ Your display is set for the "ISO-8859-10" character set.  ]
    [ Some special characters may be displayed incorrectly. ]

Hi there, I'm still investigating on the permission error... It seems that
permission mode doesn't explain the error... what I can say now is:
1- I launch the script from a directory X it goes in Eqw state
2- I copy that script in my home it runs
3- I copy a SGE example script in directory X it runs
4- I run the script from directory X but on another cluster grid (that
shares the directory X)... it runs...

the messages:

05/17/2006 16:13:48|execd|ia32|E|shepherd of job 430.1 exited with exit
status = 27
05/17/2006 16:13:48|execd|ia32|W|reaping job "430" ptf complains: Job does
not exist
05/17/2006 16:13:48|execd|ia32|E|can't open usage file
"active_jobs/430.1/usage" for job 430.1: No such file or directory
05/17/2006 16:13:48|execd|ia32|E|05/17/2006 16:13:48 [2486:4613]:
execvp(/opt/sge6/bioinfo/spool/ia32/job_scripts/430,
"/opt/sge6/bioinfo/spool/ia32/job_scripts/430") failed: No such file or
directory

Any hint?

d

On 5/10/06, Reuti <reuti at staff.uni-marburg.de> wrote:
>
> Am 10.05.2006 um 11:48 schrieb davide cittaro:
>
> > Okay, now the question: is the directory /opt/sge6/bioinfo/spool/
> > alpha2 readable/executable by all users on the execution host(s)? The
> > scripts are run directly from this location.
> >
> > Well, the permissions are 755 and other users (with 775, 771) on
> > their homes can run stuff... The users are stored in a LDAP server
> > that runs remotely... can be this a problem?
>
> Are you sure that this is the only difference - can you try to change
> the permission settings and see the result? My users also have
> different protection settings (700 or 755) and I don't face any
> problems with this setup.
>
> What Linux are you using? In Debian AFAIK the default is that each
> user is his own group, in contrast to SuSE, where all are in one
> default group. So, what are the detailed protection settings of opt/
> sge6/bioinfo/spool/alpha2? How is your primary/secondary group setup
> of your users? I have access to a Debian cluster with an external
> LDAP and all is working smoothly.
>
> -- Reuti
>
> > d
> >
> >
> >
> > -- Reuti
> >
> >
> > > the -cwd option should save him from such errors, shouldn't it?
> > >
> > > d
> > >
> > > On 5/10/06, Reuti <reuti at staff.uni-marburg.de > wrote:Hi,
> > >
> > > Am 10.05.2006 um 10:50 schrieb davide cittaro:
> > >
> > > > Hi all, I've seen that some users cannot run GE and the jobs
> > are in
> > > > Eqw state, but qstat -j doesn't say anything at all...
> > > > I don't know which permissions they have on the cwd, where they
> > > > launch jobs, but they have 700 on their /home... Is it possible
> > > > that this somehow interferes with GE?
> > >
> > >
> > > no, this should work. Is there any hint in any of the messages files
> > > $SGE_ROOT/spool/qmaster/messages or the one from the node where the
> > > job tried to start? Anything in the standard-out/-err files?
> > >
> > > -- Reuti
> > >
> > >
> > > > Thanks
> > > >
> > > > d
> > >
> > >
> > ---------------------------------------------------------------------
> > > To unsubscribe, e-mail: users-unsubscribe at gridengine.sunsource.net
> > > For additional commands, e-mail: users-help at gridengine.sunsource.net
> > >
> > >
> >
> > ---------------------------------------------------------------------
> > To unsubscribe, e-mail: users-unsubscribe at gridengine.sunsource.net
> > For additional commands, e-mail: users-help at gridengine.sunsource.net
> >
> >
>
> ---------------------------------------------------------------------
> To unsubscribe, e-mail: users-unsubscribe at gridengine.sunsource.net
> For additional commands, e-mail: users-help at gridengine.sunsource.net
>
>



More information about the gridengine-users mailing list