[GE users] sheperd error can't stat()

Tim Fennell timothy.fennell at channing.harvard.edu
Tue Dec 11 15:43:13 GMT 2007


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Hi all,
  I 've been digging through through the archives looking for an answer 
to error messages I've been receiving but have not found a solution so 
hopefully someone can help.  Here is what I'm getting for errors mailed 
to me.  Thanks in advance.

Job 9569 caused action: Job 9569 set to ERROR
 User        = nhovx0n
 Queue       = dual1.q at cilea10.channing.harvard.edu
 Host        = cilea10.channing.harvard.edu
 Start Time  = <unknown>
 End Time    = <unknown>
failed opening input/output file:12/10/2007 22:30:20 [11035:6840]: can't stat() "/proj/nhovxs/nhovx0n/caffeine/nhs" as stdout_path: P
Shepherd trace:
12/10/2007 22:30:20 [16:6839]: shepherd called with uid = 0, euid = 16
12/10/2007 22:30:20 [16:6839]: starting up 6.0u9
12/10/2007 22:30:20 [16:6839]: setpgid(6839, 6839) returned 0
12/10/2007 22:30:20 [16:6839]: no prolog script to start
12/10/2007 22:30:20 [16:6839]: forked "job" with pid 6840
12/10/2007 22:30:20 [16:6840]: pid=6840 pgrp=6840 sid=6840 old pgrp=6839 getlogin()=<no login set>
12/10/2007 22:30:20 [16:6840]: reading passwd information for user 'nhovx0n'
12/10/2007 22:30:20 [16:6840]: setosjobid: uid = 0, euid = 16
12/10/2007 22:30:20 [16:6839]: child: job - pid: 6840
12/10/2007 22:30:20 [16:6840]: setting limits
12/10/2007 22:30:20 [16:6840]: RLIMIT_CPU setting: (soft 18446744073709551613 hard 18446744073709551613) resulting: (soft 18446744073709551613 hard 18446744073709551613)
12/10/2007 22:30:20 [16:6840]: RLIMIT_FSIZE setting: (soft 13958643712 hard 13958643712) resulting: (soft 13958643712 hard 13958643712)
12/10/2007 22:30:20 [16:6840]: RLIMIT_DATA setting: (soft 18446744073709551613 hard 18446744073709551613) resulting: (soft 18446744073709551613 hard 18446744073709551613)
12/10/2007 22:30:20 [16:6840]: RLIMIT_STACK setting: (soft 18446744073709551613 hard 18446744073709551613) resulting: (soft 18446744073709551613 hard 18446744073709551613)
12/10/2007 22:30:20 [16:6840]: RLIMIT_CORE setting: (soft 18446744073709551613 hard 18446744073709551613) resulting: (soft 18446744073709551613 hard 18446744073709551613)
12/10/2007 22:30:20 [16:6840]: RLIMIT_VMEM setting: (soft 18446744073709551613 hard 18446744073709551613) resulting: (soft 18446744073709551613 hard 18446744073709551613)
12/10/2007 22:30:20 [16:6840]: setting environment
12/10/2007 22:30:20 [16:6840]: Initializing error file
12/10/2007 22:30:20 [16:6840]: switching to intermediate/target user
12/10/2007 22:30:20 [11035:6840]: closing all filedescriptors
12/10/2007 22:30:20 [11035:6840]: further messages are in "error" and "trace"
12/10/2007 22:30:20 [11035:6840]: can't stat() "/proj/nhovxs/nhovx0n/caffeine/nhs" as stdout_path: Permission denied KRB5CCNAME=none uid=11035 gid=671 671 20096 
12/10/2007 22:30:20 [16:6839]: wait3 returned 6840 (status: 6656; WIFSIGNALED: 0,  WIFEXITED: 1, WEXITSTATUS: 26)
12/10/2007 22:30:20 [16:6839]: job exited with exit status 26
12/10/2007 22:30:20 [16:6839]: reaped "job" with pid 6840
12/10/2007 22:30:20 [16:6839]: job exited not due to signal
12/10/2007 22:30:20 [16:6839]: job exited with status 26
12/10/2007 22:30:20 [16:6839]: now sending signal KILL to pid -6840
12/10/2007 22:30:20 [16:6839]: no tasker to notify
12/10/2007 22:30:20 [16:6839]: failed starting job
12/10/2007 22:30:20 [16:6839]: no epilog script to start

Shepherd error:
12/10/2007 22:30:20 [11035:6840]: can't stat() "/proj/nhovxs/nhovx0n/caffeine/nhs" as stdout_path: Permission denied KRB5CCNAME=none uid=11035 gid=671 671 20096 

Shepherd pe_hostfile:
cilea10.channing.harvard.edu 1 dual1.q at cilea10.channing.harvard.edu <NULL>


-- 
Tim Fennell
Network Administrator
Channing Laboratory

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