[GE users] LAM / MPI : Reservation

christophe.caron at jouy.inra.fr christophe.caron at jouy.inra.fr
Fri Feb 16 17:49:04 GMT 2007


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On Fri, 16 Feb 2007, Reuti wrote:

> Am 16.02.2007 um 17:39 schrieb christophe.caron at jouy.inra.fr:
>
>> Hello
>> 
>> We use SGE 6u9+MPI 7.1.1 and FSS scheduling.
>> 
>> We would to run MPI jobs with 4 slots but others "normal" jobs are
>> always submitted before the MPI jobs in the queue (even if the mpi jobs is 
>> the first in the queue wait).
>> 
>> 
>> *Reservation is enable:
>> max_reservation                   20
>> 
>> *Submission :
>> #qsub -R y -q long.q -pe lam711 4 job.sh
>
> What is qstat -j <jobid> saying (with scheduler info turned on)? The PE is 
> attached to long.q? - Reuti


# qconf -sq long.q
pe_list               make lam711


####################################################################################
#qstat -j xxx
==============================================================
job_number:                 1271926
exec_file:                  job_scripts/1271926
submission_time:            Fri Feb 16 18:38:58 2007
owner:                      steletch
uid:                        14962
group:                      mig
gid:                        233
sge_o_home:                 /home/mig/steletch
sge_o_log_name:             steletch
sge_o_path: 
/opt/sge/bin/lx24-amd64:/usr/kerberos/bin:/usr/local/bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/local/genome/arb-22-08-2003:/usr/local/public/pgaccess:/usr/local/genome/bin:/usr/local/www/bin:/usr/local/public/java/bin:/usr/sbin:/usr/local/public/bin:/usr/local/public/lam/bin:/usr/local/genome/emboss/bin:/usr/local/genome/phylip/bin:/usr/local/genome/mugen/bin:/usr/local/genome/mgadist:/usr/local/genome/MUMmer:/usr/local/genome/TMHMM/bin:/usr/local/genome/hmmer/bin:/usr/local/genome/fasta:/usr/local/genome/autodock/bin:/usr/local/genome/mcl64/mcl-05-321/bin:/usr/local/adm/bin:/usr/local/public/modeller6v2/bin:/home/mig/steletch/bin
sge_o_shell:                /bin/bash
sge_o_workdir: 
/projet/mig/steletch/20070213OR1G1_256lipids_nouveau_protocole/md
sge_o_host:                 d2r2
account:                    sge
cwd: 
/projet/mig/steletch/20070213OR1G1_256lipids_nouveau_protocole/md
path_aliases:               /tmp_mnt/ * * /
stderr_path_list: 
/projet/mig/steletch/20070213OR1G1_256lipids_nouveau_protocole/OR1G1-md.runlog
reserve:                    y
mail_options:               aes
mail_list:                  steletch at jouy.inra.fr
notify:                     FALSE
job_name:                   OR1G1-qsub-md.sh
stdout_path_list: 
/projet/mig/steletch/20070213OR1G1_256lipids_nouveau_protocole/OR1G1-md.out
jobshare:                   0
hard_queue_list:            long.q
shell_list:                 /bin/bash
...
script_file:                OR1G1-qsub-md.sh
parallel environment:  lam711 range: 2
                            queue instance "long.q at n49" dropped because it is full
                             queue instance "long.q at n56" dropped because it is full
                             queue instance "long.q at n48" dropped because it is full
                             queue instance "long.q at n44" dropped because it is full
...
                            queue instance "long.q at n65" dropped because it is full
                             queue instance "long.q at n52" dropped because it is full
                             queue instance "long.q at n53" dropped because it is full
...
                            cannot run in PE "lam711" because it only offers 60 slots
...


long.q has 120 slots and pe lam711 has only 16 slots.


cc





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**************************************************************************
Christophe Caron - INRA 	    | Tél: (+33) 013465 2888
Mathematique, Informatique et Genome| Fax: (+33) 013465 2901
Domaine de Vilvert 		    | Email: christophe.caron at jouy.inra.fr
F-78350 Jouy-en-Josas		    | http://migale.jouy.inra.fr/
**************************************************************************



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