[GE users] LAM / MPI : Reservation
Reuti
reuti at staff.uni-marburg.de
Fri Feb 16 20:28:39 GMT 2007
[ The following text is in the "ISO-8859-1" character set. ]
[ Your display is set for the "ISO-8859-10" character set. ]
[ Some special characters may be displayed incorrectly. ]
Hi again,
Am 16.02.2007 um 18:49 schrieb christophe.caron at jouy.inra.fr:
> On Fri, 16 Feb 2007, Reuti wrote:
>
>> Am 16.02.2007 um 17:39 schrieb christophe.caron at jouy.inra.fr:
>>
>>> Hello
>>> We use SGE 6u9+MPI 7.1.1 and FSS scheduling.
>>> We would to run MPI jobs with 4 slots but others "normal" jobs are
>>> always submitted before the MPI jobs in the queue (even if the
>>> mpi jobs is the first in the queue wait).
>>> *Reservation is enable:
>>> max_reservation 20
>>> *Submission :
>>> #qsub -R y -q long.q -pe lam711 4 job.sh
>>
>> What is qstat -j <jobid> saying (with scheduler info turned on)?
>> The PE is attached to long.q? - Reuti
okay, the PE definition is...? - Reuti
>
> # qconf -sq long.q
> pe_list make lam711
>
>
> ######################################################################
> ##############
> #qstat -j xxx
> ==============================================================
> job_number: 1271926
> exec_file: job_scripts/1271926
> submission_time: Fri Feb 16 18:38:58 2007
> owner: steletch
> uid: 14962
> group: mig
> gid: 233
> sge_o_home: /home/mig/steletch
> sge_o_log_name: steletch
> sge_o_path: /opt/sge/bin/lx24-amd64:/usr/kerberos/bin:/usr/local/
> bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/local/genome/arb-22-08-2003:/
> usr/local/public/pgaccess:/usr/local/genome/bin:/usr/local/www/bin:/
> usr/local/public/java/bin:/usr/sbin:/usr/local/public/bin:/usr/
> local/public/lam/bin:/usr/local/genome/emboss/bin:/usr/local/genome/
> phylip/bin:/usr/local/genome/mugen/bin:/usr/local/genome/mgadist:/
> usr/local/genome/MUMmer:/usr/local/genome/TMHMM/bin:/usr/local/
> genome/hmmer/bin:/usr/local/genome/fasta:/usr/local/genome/autodock/
> bin:/usr/local/genome/mcl64/mcl-05-321/bin:/usr/local/adm/bin:/usr/
> local/public/modeller6v2/bin:/home/mig/steletch/bin
> sge_o_shell: /bin/bash
> sge_o_workdir: /projet/mig/steletch/
> 20070213OR1G1_256lipids_nouveau_protocole/md
> sge_o_host: d2r2
> account: sge
> cwd: /projet/mig/steletch/20070213OR1G1_256lipids_nouveau_protocole/md
> path_aliases: /tmp_mnt/ * * /
> stderr_path_list: /projet/mig/steletch/
> 20070213OR1G1_256lipids_nouveau_protocole/OR1G1-md.runlog
> reserve: y
> mail_options: aes
> mail_list: steletch at jouy.inra.fr
> notify: FALSE
> job_name: OR1G1-qsub-md.sh
> stdout_path_list: /projet/mig/steletch/
> 20070213OR1G1_256lipids_nouveau_protocole/OR1G1-md.out
> jobshare: 0
> hard_queue_list: long.q
> shell_list: /bin/bash
> ...
> script_file: OR1G1-qsub-md.sh
> parallel environment: lam711 range: 2
> queue instance "long.q at n49" dropped
> because it is full
> queue instance "long.q at n56" dropped
> because it is full
> queue instance "long.q at n48" dropped
> because it is full
> queue instance "long.q at n44" dropped
> because it is full
> ...
> queue instance "long.q at n65" dropped
> because it is full
> queue instance "long.q at n52" dropped
> because it is full
> queue instance "long.q at n53" dropped
> because it is full
> ...
> cannot run in PE "lam711" because it
> only offers 60 slots
> ...
>
>
> long.q has 120 slots and pe lam711 has only 16 slots.
>
>
> cc
>
>
>
>
>
>>
>> ---------------------------------------------------------------------
>> To unsubscribe, e-mail: users-unsubscribe at gridengine.sunsource.net
>> For additional commands, e-mail: users-help at gridengine.sunsource.net
>>
>>
>
>
>
> **********************************************************************
> ****
> Christophe Caron - INRA | Tél: (+33) 013465 2888
> Mathematique, Informatique et Genome| Fax: (+33) 013465 2901
> Domaine de Vilvert | Email: christophe.caron at jouy.inra.fr
> F-78350 Jouy-en-Josas | http://migale.jouy.inra.fr/
> **********************************************************************
> ****
>
> ---------------------------------------------------------------------
> To unsubscribe, e-mail: users-unsubscribe at gridengine.sunsource.net
> For additional commands, e-mail: users-help at gridengine.sunsource.net
---------------------------------------------------------------------
To unsubscribe, e-mail: users-unsubscribe at gridengine.sunsource.net
For additional commands, e-mail: users-help at gridengine.sunsource.net
More information about the gridengine-users
mailing list