[GE users] LAM / MPI : Reservation

Reuti reuti at staff.uni-marburg.de
Fri Feb 16 20:28:39 GMT 2007


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Hi again,

Am 16.02.2007 um 18:49 schrieb christophe.caron at jouy.inra.fr:

> On Fri, 16 Feb 2007, Reuti wrote:
>
>> Am 16.02.2007 um 17:39 schrieb christophe.caron at jouy.inra.fr:
>>
>>> Hello
>>> We use SGE 6u9+MPI 7.1.1 and FSS scheduling.
>>> We would to run MPI jobs with 4 slots but others "normal" jobs are
>>> always submitted before the MPI jobs in the queue (even if the  
>>> mpi jobs is the first in the queue wait).
>>> *Reservation is enable:
>>> max_reservation                   20
>>> *Submission :
>>> #qsub -R y -q long.q -pe lam711 4 job.sh
>>
>> What is qstat -j <jobid> saying (with scheduler info turned on)?  
>> The PE is attached to long.q? - Reuti

okay, the PE definition is...? - Reuti

>
> # qconf -sq long.q
> pe_list               make lam711
>
>
> ###################################################################### 
> ##############
> #qstat -j xxx
> ==============================================================
> job_number:                 1271926
> exec_file:                  job_scripts/1271926
> submission_time:            Fri Feb 16 18:38:58 2007
> owner:                      steletch
> uid:                        14962
> group:                      mig
> gid:                        233
> sge_o_home:                 /home/mig/steletch
> sge_o_log_name:             steletch
> sge_o_path: /opt/sge/bin/lx24-amd64:/usr/kerberos/bin:/usr/local/ 
> bin:/bin:/usr/bin:/usr/X11R6/bin:/usr/local/genome/arb-22-08-2003:/ 
> usr/local/public/pgaccess:/usr/local/genome/bin:/usr/local/www/bin:/ 
> usr/local/public/java/bin:/usr/sbin:/usr/local/public/bin:/usr/ 
> local/public/lam/bin:/usr/local/genome/emboss/bin:/usr/local/genome/ 
> phylip/bin:/usr/local/genome/mugen/bin:/usr/local/genome/mgadist:/ 
> usr/local/genome/MUMmer:/usr/local/genome/TMHMM/bin:/usr/local/ 
> genome/hmmer/bin:/usr/local/genome/fasta:/usr/local/genome/autodock/ 
> bin:/usr/local/genome/mcl64/mcl-05-321/bin:/usr/local/adm/bin:/usr/ 
> local/public/modeller6v2/bin:/home/mig/steletch/bin
> sge_o_shell:                /bin/bash
> sge_o_workdir: /projet/mig/steletch/ 
> 20070213OR1G1_256lipids_nouveau_protocole/md
> sge_o_host:                 d2r2
> account:                    sge
> cwd: /projet/mig/steletch/20070213OR1G1_256lipids_nouveau_protocole/md
> path_aliases:               /tmp_mnt/ * * /
> stderr_path_list: /projet/mig/steletch/ 
> 20070213OR1G1_256lipids_nouveau_protocole/OR1G1-md.runlog
> reserve:                    y
> mail_options:               aes
> mail_list:                  steletch at jouy.inra.fr
> notify:                     FALSE
> job_name:                   OR1G1-qsub-md.sh
> stdout_path_list: /projet/mig/steletch/ 
> 20070213OR1G1_256lipids_nouveau_protocole/OR1G1-md.out
> jobshare:                   0
> hard_queue_list:            long.q
> shell_list:                 /bin/bash
> ...
> script_file:                OR1G1-qsub-md.sh
> parallel environment:  lam711 range: 2
>                            queue instance "long.q at n49" dropped  
> because it is full
>                             queue instance "long.q at n56" dropped  
> because it is full
>                             queue instance "long.q at n48" dropped  
> because it is full
>                             queue instance "long.q at n44" dropped  
> because it is full
> ...
>                            queue instance "long.q at n65" dropped  
> because it is full
>                             queue instance "long.q at n52" dropped  
> because it is full
>                             queue instance "long.q at n53" dropped  
> because it is full
> ...
>                            cannot run in PE "lam711" because it  
> only offers 60 slots
> ...
>
>
> long.q has 120 slots and pe lam711 has only 16 slots.
>
>
> cc
>
>
>
>
>
>>
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>>
>
>
>
> ********************************************************************** 
> ****
> Christophe Caron - INRA 	    | Tél: (+33) 013465 2888
> Mathematique, Informatique et Genome| Fax: (+33) 013465 2901
> Domaine de Vilvert 		    | Email: christophe.caron at jouy.inra.fr
> F-78350 Jouy-en-Josas		    | http://migale.jouy.inra.fr/
> ********************************************************************** 
> ****
>
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