[GE users] submitting parallel jobs

Rayson Ho rayrayson at gmail.com
Tue Jul 17 09:54:58 BST 2007


    [ The following text is in the "ISO-8859-1" character set. ]
    [ Your display is set for the "ISO-8859-10" character set.  ]
    [ Some special characters may be displayed incorrectly. ]

May be you can use "all.q" instead of creating a new queue for your MPI jobs.

Rayson



On 7/17/07, Heba Farouk <heba.farouk at yahoo.com> wrote:
> thank u
> i tried adding my PE to the pe_list of the queue, but
> i also got that error:
> ========================================
> qstat -j
> scheduling info:            queue instance
> "mpi_queue at sc002.sc.bibalex.org" dropped because it is
> temporarily not available
>
> Jobs can not run because queue instance is not in
> queue list of PE
>        55,     56,     57
>
> Jobs can not run because available slots combined
> under PE are not in range of job
>       55,     56,     57
> ========================================
> any suggestions
> --- Rayson Ho <rayrayson at gmail.com> wrote:
>
> > "qstat -j" is your best friend...
> >
> > And, did you add the PE to the "pe_list"?? See
> > queue_conf(5) manpage...
> >
> > Rayson
> >
> >
> >
> > On 7/17/07, Heba Farouk <heba.farouk at yahoo.com>
> > wrote:
> > >
> > > i already tried "configuring parallel environment"
> > >
> >
> http://docs.sun.com/app/docs/doc/820-0698/6ncdvjcmd?l=en&a=view#i998778
> > >
> > > and "Tight Integration of the MPICH2 library into
> > SGE"
> > >
> >
> http://gridengine.sunsource.net/howto/mpich2-integration/mpich2-integration.html
> > >
> > >
> > > but no way, all the jobs i submit remain in the
> > > pending state for ever
> > >
> > > any suggestions ??
> > >
> > > thanks in advance
> > >
> > >
> > > --- Rayson Ho <rayrayson at gmail.com> wrote:
> > >
> > > > I guess you should start with loose integration
> > > > first.
> > > >
> > > > Read the section "Configuring Parallel
> > Environments"
> > > > in the admin
> > > > guide and sge_pe(5) manpage on how to set up a
> > loose
> > > > integration. When
> > > > you have your MPI programs working, then you can
> > try
> > > > with the tight
> > > > integration, which gives you better job control
> > and
> > > > accounting.
> > > >
> > > > Also, if you are building a new cluster, I would
> > > > suggest to go with OpenMPI.
> > > >
> > > > Rayson
> > > >
> > > >
> > > >
> > > > On 7/16/07, Heba Farouk <heba.farouk at yahoo.com>
> > > > wrote:
> > > > > hello there
> > > > > i'm newbie to grid engine software and need ur
> > > > help.
> > > > > i would like to have a simple guide on how to
> > run
> > > > > parallel jobs using grid engine using mpich2
> > > > >
> > > > > thanks in advance
> > > > >
> > > > > Yours
> > > > >
> > > > > Heba
> > > > >
> > > > >
> > > > >
> > > > >
> > > > >
> > > >
> > >
> >
> ____________________________________________________________________________________
> > > > > It's here! Your new message!
> > > > > Get new email alerts with the free Yahoo!
> > Toolbar.
> > > > >
> > > >
> > http://tools.search.yahoo.com/toolbar/features/mail/
> > > > >
> > > > >
> > > >
> > >
> >
> ---------------------------------------------------------------------
> > > > > To unsubscribe, e-mail:
> > > > users-unsubscribe at gridengine.sunsource.net
> > > > > For additional commands, e-mail:
> > > > users-help at gridengine.sunsource.net
> > > > >
> > > > >
> > > >
> > > >
> > >
> >
> ---------------------------------------------------------------------
> > > > To unsubscribe, e-mail:
> > > > users-unsubscribe at gridengine.sunsource.net
> > > > For additional commands, e-mail:
> > > > users-help at gridengine.sunsource.net
> > > >
> > > >
> > >
> > >
> > > Yours
> > >
> > > Heba
> > >
> > >
> > >
> > >
> > >
> >
> ____________________________________________________________________________________
> > > Don't pick lemons.
> > > See all the new 2007 cars at Yahoo! Autos.
> > > http://autos.yahoo.com/new_cars.html
> > >
> > >
> >
> ---------------------------------------------------------------------
> > > To unsubscribe, e-mail:
> > users-unsubscribe at gridengine.sunsource.net
> > > For additional commands, e-mail:
> > users-help at gridengine.sunsource.net
> > >
> > >
> >
> >
> ---------------------------------------------------------------------
> > To unsubscribe, e-mail:
> > users-unsubscribe at gridengine.sunsource.net
> > For additional commands, e-mail:
> > users-help at gridengine.sunsource.net
> >
> >
>
>
> Yours
>
> Heba
>
>
>
>
> ____________________________________________________________________________________
> Be a better Heartthrob. Get better relationship answers from someone who knows. Yahoo! Answers - Check it out.
> http://answers.yahoo.com/dir/?link=list&sid=396545433
>
> ---------------------------------------------------------------------
> To unsubscribe, e-mail: users-unsubscribe at gridengine.sunsource.net
> For additional commands, e-mail: users-help at gridengine.sunsource.net
>
>

---------------------------------------------------------------------
To unsubscribe, e-mail: users-unsubscribe at gridengine.sunsource.net
For additional commands, e-mail: users-help at gridengine.sunsource.net




More information about the gridengine-users mailing list