[GE users] Failure when trying to submit java job to SGE 5.3
dennis.williams at bjss.co.uk
Thu Jul 19 17:28:54 BST 2007
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I'm operating SGE 5.3 on Linux (Fedora 6). I'm trying to work out how to submit a batch script job to a sun grid engine 5.3. The job can be executed from the command line using the following command:
./job.sh <a number> <a xml file name>
./job.sh 1 workflow.xml
The job.sh script executes a java process and looks something like this...
java -cp $CLASSPATH uk.co.bjss.prototype.jobs.JobProcess $1 $2
I've tried submitting the job to the grid engine using the following:
qsub -N job.sh 1 workflow.xml
Unfortunately this yields the following errors in
Warning: no access to tty (Bad file descriptor).
Thus no job control in this shell.
: Command not found.
CLASSPATH: Undefined variable.
I understand that I may be using the wrong qsub syntax.
Any suggestions welcome.
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