[GE users] qdel not remove all instances of jobs

Simon Gao gao at schrodinger.com
Thu Mar 22 18:51:44 GMT 2007


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> ps -e f -o pid,ppid,pgrp,command
>
> as it will provide more details. Thx - Reuti
>
Here is an example:

Before running qdel, the job runs on a compute node as:

24140     1 24140   /opt/gridengine/bin/lx26-x86/sge_execd
12002 24140 12002     sge_shepherd-17663 -bg
12003 12002 12003       /bin/sh /scr/apps/mms/bin/Linux-x86/jmonitor
12192 12003 12192         /scr/apps/mms/bin/Linux-x86/perl 
/scr/apps/mms/bin/Linux-x86/jmonitor.pl
12222 12192 12222           sh -c /scr/apps/ppro/bin/Linux-x86/main1m 
marci-0-4602b39d.TIN.inp > 1ett_dock.log 2>&1
12223 12222 12222             /scr/apps/ppro/bin/Linux-x86/main1m 
marci-0-4602b39d.TIN.inp

After running qdel, the jobs removed from queue, but continue to run on 
the compute node:

24140     1 24140   /opt/gridengine/bin/lx26-x86/sge_execd
12192     1 12192   /scr/apps/mms/bin/Linux-x86/perl 
/scr/apps/mms/bin/Linux-x86/jmonitor.pl
12222 12192 12222     sh -c /scr/apps/ppro/bin/Linux-x86/main1m 
marci-0-4602b39d.TIN.inp > 1ett_dock.log 2>&1
12223 12222 12222       /scr/apps/ppro/bin/Linux-x86/main1m 
marci-0-4602b39d.TIN.inp

Simon

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