[GE users] Help: How to know running time

Amy Lee openlinuxsource at gmail.com
Thu Nov 1 13:44:51 GMT 2007


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Reuti wrote:
> Am 31.10.2007 um 11:21 schrieb Lee Amy:
>
>> 2007/10/30, Reuti <reuti at staff.uni-marburg.de>: Am 30.10.2007 um 
>> 13:30 schrieb Lee Amy:
>>
>> > Is there any way to know what the job running time is when using
>> > SGE? I suppose that this function would like the command "time" in
>> > Linux.
>> >
>> > Thank you very much~
>>
>> You might have a look at: qacct -j <jobid>
>>
>> and its man page.
>>
>> -- Reuti
>>
>>
>> ---------------------------------------------------------------------
>> To unsubscribe, e-mail: users-unsubscribe at gridengine.sunsource.net
>> For additional commands, e-mail: users-help at gridengine.sunsource.net
>>
>> Thank your reply. And I use "qstat" to show the job id, then use 
>> "qacct -j 15", it says that cannot find job id 15. So what's the 
>> correct usage to "qacct -j"?
>
> The qacct it only updated *after* the job finished. Otherwise there is 
> an usage line in qstat -j <jobid>.
>
> -- Reuti
>
>
> ---------------------------------------------------------------------
> To unsubscribe, e-mail: users-unsubscribe at gridengine.sunsource.net
> For additional commands, e-mail: users-help at gridengine.sunsource.net
>
>
There's the output.
Amy Lee


    [ Part 2: "Attached Text" ]

==============================================================
qname        all.q               
hostname     gnode1              
group        UNKNOWN             
owner        root                
project      NONE                
department   defaultdepartment   
jobname      clustalw-mpi.sh     
jobnumber    18                  
taskid       undefined
account      sge                 
priority     0                   
qsub_time    Thu Jan  1 08:00:00 1970
start_time   Thu Nov  1 13:20:24 2007
end_time     Thu Nov  1 13:21:32 2007
granted_pe   mpich               
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exit_status  0                   
ru_wallclock 68           
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ru_idrss     0                   
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ru_inblock   0                   
ru_oublock   0                   
ru_msgsnd    0                   
ru_msgrcv    0                   
ru_nsignals  0                   
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ru_nivcsw    188                 
cpu          26           
mem          0.205             
io           0.000             
iow          0.000             
maxvmem      19.316M
==============================================================
qname        all.q               
hostname     gnode1              
group        UNKNOWN             
owner        root                
project      NONE                
department   defaultdepartment   
jobname      clustalw-mpi.sh     
jobnumber    18                  
taskid       undefined
account      sge                 
priority     0                   
qsub_time    Thu Jan  1 08:00:00 1970
start_time   Thu Nov  1 13:20:24 2007
end_time     Thu Nov  1 13:21:33 2007
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ru_wallclock 69           
ru_utime     37           
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ru_ixrss     0                   
ru_ismrss    0                   
ru_idrss     0                   
ru_isrss     0                   
ru_minflt    5411                
ru_majflt    0                   
ru_nswap     0                   
ru_inblock   0                   
ru_oublock   0                   
ru_msgsnd    0                   
ru_msgrcv    0                   
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ru_nvcsw     34490               
ru_nivcsw    607                 
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io           0.000             
iow          0.000             
maxvmem      19.316M
==============================================================
qname        all.q               
hostname     gnode1              
group        UNKNOWN             
owner        root                
project      NONE                
department   defaultdepartment   
jobname      clustalw-mpi.sh     
jobnumber    18                  
taskid       undefined
account      sge                 
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qsub_time    Thu Jan  1 08:00:00 1970
start_time   Thu Nov  1 13:20:24 2007
end_time     Thu Nov  1 13:21:32 2007
granted_pe   mpich               
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ru_ixrss     0                   
ru_ismrss    0                   
ru_idrss     0                   
ru_isrss     0                   
ru_minflt    14393               
ru_majflt    0                   
ru_nswap     0                   
ru_inblock   0                   
ru_oublock   0                   
ru_msgsnd    0                   
ru_msgrcv    0                   
ru_nsignals  0                   
ru_nvcsw     9768                
ru_nivcsw    2729                
cpu          28           
mem          0.214             
io           0.000             
iow          0.000             
maxvmem      19.316M
==============================================================
qname        all.q               
hostname     gnode4              
group        UNKNOWN             
owner        root                
project      NONE                
department   defaultdepartment   
jobname      clustalw-mpi.sh     
jobnumber    18                  
taskid       undefined
account      sge                 
priority     0                   
qsub_time    Thu Jan  1 08:00:00 1970
start_time   Thu Nov  1 13:23:34 2007
end_time     Thu Nov  1 13:24:44 2007
granted_pe   mpich               
slots        19                  
failed       0    
exit_status  0                   
ru_wallclock 70           
ru_utime     36           
ru_stime     1            
ru_maxrss    0                   
ru_ixrss     0                   
ru_ismrss    0                   
ru_idrss     0                   
ru_isrss     0                   
ru_minflt    43307               
ru_majflt    0                   
ru_nswap     0                   
ru_inblock   0                   
ru_oublock   0                   
ru_msgsnd    0                   
ru_msgrcv    0                   
ru_nsignals  0                   
ru_nvcsw     25409               
ru_nivcsw    477                 
cpu          38           
mem          0.292             
io           0.000             
iow          0.000             
maxvmem      19.316M
==============================================================
qname        all.q               
hostname     gnode2              
group        UNKNOWN             
owner        root                
project      NONE                
department   defaultdepartment   
jobname      clustalw-mpi.sh     
jobnumber    18                  
taskid       undefined
account      sge                 
priority     0                   
qsub_time    Thu Jan  1 08:00:00 1970
start_time   Mon Aug 13 13:20:33 2007
end_time     Mon Aug 13 13:21:40 2007
granted_pe   mpich               
slots        19                  
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ru_wallclock 67           
ru_utime     24           
ru_stime     0            
ru_maxrss    0                   
ru_ixrss     0                   
ru_ismrss    0                   
ru_idrss     0                   
ru_isrss     0                   
ru_minflt    3990                
ru_majflt    0                   
ru_nswap     0                   
ru_inblock   0                   
ru_oublock   0                   
ru_msgsnd    0                   
ru_msgrcv    0                   
ru_nsignals  0                   
ru_nvcsw     625                 
ru_nivcsw    83                  
cpu          25           
mem          0.195             
io           0.000             
iow          0.000             
maxvmem      19.316M
==============================================================
qname        all.q               
hostname     gnode2              
group        UNKNOWN             
owner        root                
project      NONE                
department   defaultdepartment   
jobname      clustalw-mpi.sh     
jobnumber    18                  
taskid       undefined
account      sge                 
priority     0                   
qsub_time    Thu Jan  1 08:00:00 1970
start_time   Mon Aug 13 13:20:32 2007
end_time     Mon Aug 13 13:21:40 2007
granted_pe   mpich               
slots        19                  
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exit_status  0                   
ru_wallclock 68           
ru_utime     25           
ru_stime     0            
ru_maxrss    0                   
ru_ixrss     0                   
ru_ismrss    0                   
ru_idrss     0                   
ru_isrss     0                   
ru_minflt    3377                
ru_majflt    0                   
ru_nswap     0                   
ru_inblock   0                   
ru_oublock   0                   
ru_msgsnd    0                   
ru_msgrcv    0                   
ru_nsignals  0                   
ru_nvcsw     816                 
ru_nivcsw    114                 
cpu          25           
mem          0.198             
io           0.000             
iow          0.000             
maxvmem      19.316M
==============================================================
qname        all.q               
hostname     gnode3              
group        UNKNOWN             
owner        root                
project      NONE                
department   defaultdepartment   
jobname      clustalw-mpi.sh     
jobnumber    18                  
taskid       undefined
account      sge                 
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qsub_time    Thu Jan  1 08:00:00 1970
start_time   Thu Nov  1 13:23:59 2007
end_time     Thu Nov  1 13:25:07 2007
granted_pe   mpich               
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ru_ismrss    0                   
ru_idrss     0                   
ru_isrss     0                   
ru_minflt    32093               
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ru_msgrcv    0                   
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ru_nivcsw    50                  
cpu          26           
mem          0.205             
io           0.000             
iow          0.000             
maxvmem      19.316M
==============================================================
qname        all.q               
hostname     gnode3              
group        UNKNOWN             
owner        root                
project      NONE                
department   defaultdepartment   
jobname      clustalw-mpi.sh     
jobnumber    18                  
taskid       undefined
account      sge                 
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qsub_time    Thu Jan  1 08:00:00 1970
start_time   Thu Nov  1 13:23:59 2007
end_time     Thu Nov  1 13:25:07 2007
granted_pe   mpich               
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ru_wallclock 68           
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ru_ixrss     0                   
ru_ismrss    0                   
ru_idrss     0                   
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ru_minflt    3659                
ru_majflt    0                   
ru_nswap     0                   
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ru_oublock   0                   
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ru_msgrcv    0                   
ru_nsignals  0                   
ru_nvcsw     18997               
ru_nivcsw    282                 
cpu          30           
mem          0.235             
io           0.000             
iow          0.000             
maxvmem      19.316M
==============================================================
qname        all.q               
hostname     gnode5              
group        UNKNOWN             
owner        root                
project      NONE                
department   defaultdepartment   
jobname      clustalw-mpi.sh     
jobnumber    18                  
taskid       undefined
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priority     0                   
qsub_time    Thu Jan  1 08:00:00 1970
start_time   Thu Nov  1 13:26:04 2007
end_time     Thu Nov  1 13:27:11 2007
granted_pe   mpich               
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ru_wallclock 67           
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ru_stime     0            
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ru_ixrss     0                   
ru_ismrss    0                   
ru_idrss     0                   
ru_isrss     0                   
ru_minflt    3161                
ru_majflt    0                   
ru_nswap     0                   
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ru_nvcsw     2785                
ru_nivcsw    144                 
cpu          26           
mem          0.203             
io           0.000             
iow          0.000             
maxvmem      19.316M
==============================================================
qname        all.q               
hostname     gnode5              
group        UNKNOWN             
owner        root                
project      NONE                
department   defaultdepartment   
jobname      clustalw-mpi.sh     
jobnumber    18                  
taskid       undefined
account      sge                 
priority     0                   
qsub_time    Thu Jan  1 08:00:00 1970
start_time   Thu Nov  1 13:26:03 2007
end_time     Thu Nov  1 13:27:11 2007
granted_pe   mpich               
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ru_wallclock 68           
ru_utime     25           
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ru_maxrss    0                   
ru_ixrss     0                   
ru_ismrss    0                   
ru_idrss     0                   
ru_isrss     0                   
ru_minflt    33067               
ru_majflt    0                   
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ru_inblock   0                   
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ru_msgsnd    0                   
ru_msgrcv    0                   
ru_nsignals  0                   
ru_nvcsw     3898                
ru_nivcsw    111                 
cpu          26           
mem          0.202             
io           0.000             
iow          0.000             
maxvmem      19.316M
==============================================================
qname        all.q               
hostname     gnode4              
group        UNKNOWN             
owner        root                
project      NONE                
department   defaultdepartment   
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taskid       undefined
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qsub_time    Thu Jan  1 08:00:00 1970
start_time   Thu Nov  1 13:23:35 2007
end_time     Thu Nov  1 13:24:44 2007
granted_pe   mpich               
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ru_wallclock 69           
ru_utime     25           
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ru_maxrss    0                   
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ru_ismrss    0                   
ru_idrss     0                   
ru_isrss     0                   
ru_minflt    3836                
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ru_nivcsw    663                 
cpu          25           
mem          0.199             
io           0.000             
iow          0.000             
maxvmem      19.316M
==============================================================
qname        all.q               
hostname     gnode4              
group        UNKNOWN             
owner        root                
project      NONE                
department   defaultdepartment   
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taskid       undefined
account      sge                 
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qsub_time    Thu Jan  1 08:00:00 1970
start_time   Thu Nov  1 13:23:35 2007
end_time     Thu Nov  1 13:24:44 2007
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ru_ismrss    0                   
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ru_minflt    3504                
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ru_oublock   0                   
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ru_msgrcv    0                   
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ru_nvcsw     459                 
ru_nivcsw    8224                
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iow          0.000             
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==============================================================
qname        all.q               
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group        UNKNOWN             
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taskid       undefined
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start_time   Mon Aug 13 13:20:33 2007
end_time     Mon Aug 13 13:21:40 2007
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ru_idrss     0                   
ru_isrss     0                   
ru_minflt    3559                
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ru_inblock   0                   
ru_oublock   0                   
ru_msgsnd    0                   
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ru_nivcsw    133                 
cpu          25           
mem          0.195             
io           0.000             
iow          0.000             
maxvmem      19.316M
==============================================================
qname        all.q               
hostname     gnode2              
group        UNKNOWN             
owner        root                
project      NONE                
department   defaultdepartment   
jobname      clustalw-mpi.sh     
jobnumber    18                  
taskid       undefined
account      sge                 
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qsub_time    Thu Jan  1 08:00:00 1970
start_time   Mon Aug 13 13:20:32 2007
end_time     Mon Aug 13 13:21:40 2007
granted_pe   mpich               
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ru_wallclock 68           
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ru_ismrss    0                   
ru_idrss     0                   
ru_isrss     0                   
ru_minflt    3280                
ru_majflt    0                   
ru_nswap     0                   
ru_inblock   0                   
ru_oublock   0                   
ru_msgsnd    0                   
ru_msgrcv    0                   
ru_nsignals  0                   
ru_nvcsw     11010               
ru_nivcsw    96                  
cpu          27           
mem          0.215             
io           0.000             
iow          0.000             
maxvmem      19.316M
==============================================================
qname        all.q               
hostname     gnode3              
group        UNKNOWN             
owner        root                
project      NONE                
department   defaultdepartment   
jobname      clustalw-mpi.sh     
jobnumber    18                  
taskid       undefined
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qsub_time    Thu Jan  1 08:00:00 1970
start_time   Thu Nov  1 13:23:58 2007
end_time     Thu Nov  1 13:25:08 2007
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ru_wallclock 70           
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ru_ixrss     0                   
ru_ismrss    0                   
ru_idrss     0                   
ru_isrss     0                   
ru_minflt    30257               
ru_majflt    0                   
ru_nswap     0                   
ru_inblock   0                   
ru_oublock   0                   
ru_msgsnd    0                   
ru_msgrcv    0                   
ru_nsignals  0                   
ru_nvcsw     3298                
ru_nivcsw    84                  
cpu          26           
mem          0.202             
io           0.000             
iow          0.000             
maxvmem      19.316M
==============================================================
qname        all.q               
hostname     gnode3              
group        UNKNOWN             
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project      NONE                
department   defaultdepartment   
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jobnumber    18                  
taskid       undefined
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qsub_time    Thu Jan  1 08:00:00 1970
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end_time     Thu Nov  1 13:25:08 2007
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ru_wallclock 70           
ru_utime     25           
ru_stime     0            
ru_maxrss    0                   
ru_ixrss     0                   
ru_ismrss    0                   
ru_idrss     0                   
ru_isrss     0                   
ru_minflt    27212               
ru_majflt    0                   
ru_nswap     0                   
ru_inblock   0                   
ru_oublock   0                   
ru_msgsnd    0                   
ru_msgrcv    0                   
ru_nsignals  0                   
ru_nvcsw     6202                
ru_nivcsw    2310                
cpu          26           
mem          0.204             
io           0.000             
iow          0.000             
maxvmem      19.316M
==============================================================
qname        all.q               
hostname     gnode5              
group        UNKNOWN             
owner        root                
project      NONE                
department   defaultdepartment   
jobname      clustalw-mpi.sh     
jobnumber    18                  
taskid       undefined
account      sge                 
priority     0                   
qsub_time    Thu Jan  1 08:00:00 1970
start_time   Thu Nov  1 13:26:03 2007
end_time     Thu Nov  1 13:27:11 2007
granted_pe   mpich               
slots        19                  
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ru_wallclock 68           
ru_utime     26           
ru_stime     0            
ru_maxrss    0                   
ru_ixrss     0                   
ru_ismrss    0                   
ru_idrss     0                   
ru_isrss     0                   
ru_minflt    12097               
ru_majflt    0                   
ru_nswap     0                   
ru_inblock   0                   
ru_oublock   0                   
ru_msgsnd    0                   
ru_msgrcv    0                   
ru_nsignals  0                   
ru_nvcsw     9074                
ru_nivcsw    382                 
cpu          27           
mem          0.211             
io           0.000             
iow          0.000             
maxvmem      19.316M
==============================================================
qname        all.q               
hostname     gnode5              
group        UNKNOWN             
owner        root                
project      NONE                
department   defaultdepartment   
jobname      clustalw-mpi.sh     
jobnumber    18                  
taskid       undefined
account      sge                 
priority     0                   
qsub_time    Thu Jan  1 08:00:00 1970
start_time   Thu Nov  1 13:26:03 2007
end_time     Thu Nov  1 13:27:11 2007
granted_pe   mpich               
slots        19                  
failed       0    
exit_status  0                   
ru_wallclock 68           
ru_utime     25           
ru_stime     0            
ru_maxrss    0                   
ru_ixrss     0                   
ru_ismrss    0                   
ru_idrss     0                   
ru_isrss     0                   
ru_minflt    4290                
ru_majflt    0                   
ru_nswap     0                   
ru_inblock   0                   
ru_oublock   0                   
ru_msgsnd    0                   
ru_msgrcv    0                   
ru_nsignals  0                   
ru_nvcsw     3651                
ru_nivcsw    208                 
cpu          26           
mem          0.204             
io           0.000             
iow          0.000             
maxvmem      19.316M
==============================================================
qname        all.q               
hostname     gnode4              
group        UNKNOWN             
owner        root                
project      NONE                
department   defaultdepartment   
jobname      clustalw-mpi.sh     
jobnumber    18                  
taskid       undefined
account      sge                 
priority     0                   
qsub_time    Thu Nov  1 13:20:17 2007
start_time   Thu Nov  1 13:23:34 2007
end_time     Thu Nov  1 13:24:45 2007
granted_pe   mpich               
slots        19                  
failed       0    
exit_status  0                   
ru_wallclock 71           
ru_utime     20           
ru_stime     1            
ru_maxrss    0                   
ru_ixrss     0                   
ru_ismrss    0                   
ru_idrss     0                   
ru_isrss     0                   
ru_minflt    140034              
ru_majflt    7                   
ru_nswap     0                   
ru_inblock   0                   
ru_oublock   0                   
ru_msgsnd    0                   
ru_msgrcv    0                   
ru_nsignals  0                   
ru_nvcsw     17246               
ru_nivcsw    796                 
cpu          21           
mem          0.265             
io           0.000             
iow          0.000             
maxvmem      382.906M



    [ Part 3: "Attached Text" ]

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