[GE users] qdel

John_Tai John_Tai at smics.com
Mon Nov 5 05:34:22 GMT 2007


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Here is the output. I started the job as eldo mult.cir, stopped the process with ctrl-c, but the process is still running. 
Thanks for helping.

  PID  PPID  PGRP COMMAND
    9     0     1 [migration/7]
    8     0     1 [migration/6]
    7     0     1 [migration/5]
    6     0     1 [migration/4]
    5     0     1 [migration/3]
    4     0     1 [migration/2]
    3     0     1 [migration/1]
    2     0     1 [migration/0]
    1     0     0 init
   10     1     1 [keventd]
   11     1     1 [ksoftirqd/0]
   12     1     1 [ksoftirqd/1]
   13     1     1 [ksoftirqd/2]
   14     1     1 [ksoftirqd/3]
   15     1     1 [ksoftirqd/4]
   16     1     1 [ksoftirqd/5]
   17     1     1 [ksoftirqd/6]
   18     1     1 [ksoftirqd/7]
   21     1     1 [bdflush]
   19     1     1 [kswapd]
   20     1     1 [kscand]
   22     1     1 [kupdated]
   23     1     1 [mdrecoveryd]
   29     1     1 [scsi_eh_0]
   30     1     1 [aacraid]
   33     1     1 [scsi_eh_1]
   34     1     1 [scsi_eh_2]
   35     1     1 [scsi_eh_3]
   36     1     1 [scsi_eh_4]
   39     1     1 [qla2300_dpc5]
   40     1     1 [scsi_eh_5]
   46     1     1 [kjournald]
  105     1     1 [khubd]
  724     1     1 [kjournald]
 2212     1  2212 syslogd -m 0
 2216     1  2216 klogd -x
 2227     1  2227 irqbalance
 2245     1  2245 portmap
 2265     1  2265 rpc.statd
 2277     1  2277 mdadm --monitor --scan -f
 2328     1  2327 ypbind
 2463     1  2463 /usr/sbin/automount --timeout=60 /home yp auto.home
 2478     1  2478 /usr/sbin/acpid
 2487     1     1 [rpciod]
 2488     1     1 [lockd]
 2538     1  2538 /home/sge/sge6.1/bin/lx24-amd64/sge_execd
 2577     1  2577 /usr/sbin/sshd
12237  2577 12237  \_ sshd: root at pts/0
12240 12237 12240      \_ -bash
13536 12240 13536          \_ ps -e f -o pid,ppid,pgrp,command
 2593     1  2593 xinetd -stayalive -pidfile /var/run/xinetd.pid
 2611     1  2611 gpm -t imps2 -m /dev/mouse
 2622     1  2622 /usr/sbin/cannaserver -syslog -u bin
 2635     1  2635 crond
12293  2635  2635  \_ CROND
12343 12293  2635      \_ /usr/sbin/sendmail -FCronDaemon -i -odi -oem root
 2647     1  2647 /usr/bin/jserver
 2684     1  2684 xfs -droppriv -daemon
 2694     1  2694 /usr/sbin/atd
 2706     1  2706 login -- root     
 2716  2706  2716  \_ -bash
 2707     1  2707 login -- root     
 4061  2707  4061  \_ -bash
 2708     1  2708 login -- root     
 5381  2708  5381  \_ -bash
 2709     1  2709 /sbin/mingetty tty4
 2710     1  2710 /sbin/mingetty tty5
 2711     1  2711 /sbin/mingetty tty6
 2774     1     1 [kjournald]
24637     1 24637 rpc.rquotad
24641     1     1 [nfsd]
24642     1     1 [nfsd]
24643     1     1 [nfsd]
24644     1     1 [nfsd]
24645     1     1 [nfsd]
24646     1     1 [nfsd]
24647     1     1 [nfsd]
24648     1     1 [nfsd]
24652     1 24652 rpc.mountd
 6275     1  6275 cupsd
11526     1 11526 /home/sge/sge6.1/utilbin/lx24-amd64/rshd -l
11527 11526 11527  \_ /home/sge/sge6.1/utilbin/lx24-amd64/qrsh_starter /data1/sge/spool/dsls1/active_jobs/219731.1
11560 11527 11560      \_ tcsh -c eldo mult.cir
11593 11560 11560          \_ /bin/sh /home/edamgr/linux/mentor/ams_2007.1-64bit/bin/eldo mult.cir
11864 11593 11560              \_ /bin/sh /home/edamgr/linux/mentor/ams_2007.1-64bit/com/eldo mult.cir
11877 11864 11560                  \_ /home/edamgr/linux/mentor/ams_2007.1-64bit/aol/bin/eldo_64.exe -i mult.cir
11886 11877 11560                      \_ /bin/sh /home/edamgr/linux/mentor/ams_2007.1-64bit/bin/run_wdb_server
12157 11886 11560                          \_ /bin/sh /home/edamgr/linux/mentor/ams_2007.1-64bit/aol/bin/run_wdb_server
12158 12157 11560                              \_ /home/edamgr/linux/mentor/ams_2007.1-64bit/jre/aol/bin/java -DMGC_TMPDIR=/tmp -DAMS_WDBSERVER_INFO=/home/1




-----Original Message-----
From: Reuti [mailto:reuti at staff.uni-marburg.de]
Sent: Friday, November 02, 2007 5:45 PM
To: users at gridengine.sunsource.net
Subject: Re: [GE users] qdel


Am 02.11.2007 um 06:36 schrieb John_Tai:

> Sorry I am late. I tried that command but it doesn't work. Is this  
> what you were looking for?
>
>  ps -ef |grep eldo

Yes, nearly. Blank between -e and f is important. It would also be  
useful to get the process group:

ps -e f -o pid,ppid,pgrp,command

> johnt    18024 17996  0 13:31 ?        00:00:00 tcsh -c eldo mult.cir
> johnt    18054 18024  0 13:31 ?        00:00:00 /bin/sh /home/ 
> edamgr/linux/mentor/ams_2007.1-64bit/bin/eldo mult.cir
> johnt    18325 18054  0 13:31 ?        00:00:00 /bin/sh /home/ 
> edamgr/linux/mentor/ams_2007.1-64bit/com/eldo mult.cir
> johnt    18337 18325 84 13:31 ?        00:02:05 /home/edamgr/linux/ 
> mentor/ams_2007.1-64bit/aol/bin/eldo_64.exe -i mult.cir

-- Reuti

>
>
>
> -----Original Message-----
> From: Reuti [mailto:reuti at staff.uni-marburg.de]
> Sent: Tuesday, October 23, 2007 5:51 PM
> To: users at gridengine.sunsource.net
> Subject: Re: [GE users] qdel
>
>
> Hi,
>
> Am 23.10.2007 um 08:39 schrieb John_Tai:
>
>> After upgrading to 6.1 qdel doesn't kill the process on the
>> execution host anymore. The job is not in qstat, but the process
>> itself is still running.
>>
>> The job is submitted using:
>>
>> qrsh -v eda=$cmd -cwd -now n <command>
>>
>> We used to be able to delete the job with qdel or even with ctrl-c,
>> but now it doesn't work anymore.
>>
>> Any ideas why or how to debug?
>
> what is a:
>
> qrsh -v eda=$cmd -cwd ps -e f -o pid,ppid,pgrp,command
>
> showing? It should show all processes bound to the sge_shepherd.
>
> -- Reuti
>
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