[GE users] New grid problems

Robert White alphamonk at gmail.com
Sat Jan 26 01:18:02 GMT 2008


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Hi Rayson,

This is my library path after sshing directly into sisko.
##
[robertw at sisko robertw]echo $LD_LIBRARY_PATH
/tools/se/NEC/CSR_be90/ARM_DSM/32bit/latest/DSM_NBARM926C1616T00P9V10_lic_CB90M_ncverilog_Linux-32_1.0/simulation_models//ModelManager/MMAPI_5.0.1/Linux/MM/cadence_nc_verilog:/tools/novas/verdi/latest/share/PLI/systemc/ncsc53/lib-linux_gcc3_23:/tools/novas/verdi/latest/share/FsdbWriter/LINUX:/tools/novas/verdi/latest/share/PLI/nc51/LINUX/nc_loadpli1:/tools/cadence/ius58s3/tools/tbsc/lib/gnu:/tools/cadence/ius58s3/tools/systemc/gcc/3.2.3/install/lib:.:/tools/cadence/ius58s3//tools/inca/lib:/tools/cadence/ius58s3//tools/lib:/tools/cadence/ius58s3//tools/ict/Linux/pli/ncv1_21:/usr/lib:/usr/local/lib:/tools/ActiveTcl/lib:/tools/denali/denali_3.2.050/verilog:/tools/denali/denali_3.2.050/ddvapi:/tools/vera/vera-
6.3.10-linux2.4.7
/lib:/tools/cadence/ius58s3/tools/systemc/gcc/3.2.3/install/lib
###

This is my library path after qlogining into sisko
###
[robertw at sisko robertw]echo $LD_LIBRARY_PATH
/tools/se/NEC/CSR_be90/ARM_DSM/32bit/latest/DSM_NBARM926C1616T00P9V10_lic_CB90M_ncverilog_Linux-32_1.0/simulation_models//ModelManager/MMAPI_5.0.1/Linux/MM/cadence_nc_verilog:/tools/novas/verdi/latest/share/PLI/systemc/ncsc53/lib-linux_gcc3_23:/tools/novas/verdi/latest/share/FsdbWriter/LINUX:/tools/novas/verdi/latest/share/PLI/nc51/LINUX/nc_loadpli1:/tools/cadence/ius58s3/tools/tbsc/lib/gnu:/tools/cadence/ius58s3/tools/systemc/gcc/3.2.3/install/lib:.:/tools/cadence/ius58s3//tools/inca/lib:/tools/cadence/ius58s3//tools/lib:/tools/cadence/ius58s3//tools/ict/Linux/pli/ncv1_21:/usr/lib:/usr/local/lib:/tools/ActiveTcl/lib:/tools/denali/denali_3.2.050/verilog:/tools/denali/denali_3.2.050/ddvapi:/tools/vera/vera-
6.3.10-linux2.4.7
/lib:/tools/cadence/ius58s3/tools/systemc/gcc/3.2.3/install/lib
###

A diff of the two doesn't show any differences.

Bob


On Jan 25, 2008 6:47 PM, Rayson Ho <rayrayson at gmail.com> wrote:

> Can you check the LD_LIBRARY_PATH difference between your shell and
> the SGE job environment??
>
> Rayson
>
>
>
> On Jan 25, 2008 7:29 PM, Robert White <alphamonk at gmail.com> wrote:
> >
> > Hi All,
> >
> > I have a job script that runs correctly when I run the application from
> the
> > command line on a execution host without sending the app through SGE. If
> I
> > run the job through grid either using qrsh, qsub or qlogin, I receive
> the
> > same error. The error complains about a library file that. This is the
> error
> > message. "libdenpli.so: failed cannot open shared object file: No such
> file
> > or directory or file is not valid ELFCLASS32 library"
> >
> > When I run the command on an execution host and use strace to see if
> find
> > this library this is what I see.
> > open("/tools/denali/denali_3.2.050/verilog/libdenpli.so", O_RDONLY) = 10
> > read(10, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\300\275"...,
> 512)
> > = 512
> > fstat64(10, {st_mode=S_IFREG|0755, st_size=19806385, ...}) = 0
> >  old_mmap(NULL, 27237300, PROT_READ|PROT_EXEC, MAP_PRIVATE, 10, 0) =
> > 0x32fae000
> > old_mmap(0x33fc4000, 1052672, PROT_READ|PROT_WRITE,
> MAP_PRIVATE|MAP_FIXED,
> > 10, 0x1015000) = 0x33fc4000
> > old_mmap(0x340c5000, 9317300, PROT_READ|PROT_WRITE,
> > MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0x340c5000
> >  close(10)                               = 0
> >
> >
> >
> > When I do a qlogin and ran the command by hand using strace and found
> this
> > at the point where the library file is being accessed.
> > open("/tools/denali/denali_3.2.050/verilog/libdenpli.so", O_RDONLY) = 10
> > read(10, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\300\275"...,
> 512)
> > = 512
> > fstat64(10, {st_mode=S_IFREG|0755, st_size=19806385, ...}) = 0
> >  old_mmap(NULL, 27237300, PROT_READ|PROT_EXEC, MAP_PRIVATE, 10, 0) = -1
> > ENOMEM (Cannot allocate memory)
> > close(10)                               = 0
> >
> > Does anyone know what this problem could be? Are there any memory
> > limitations that I have someone that I am not aware of. This is a new
> > install of SGE 6.1u2 running on RHEL3.9 computers.
> >
> > Thanks Bob
> >
>
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