[GE users] "Output file too large" errors back?

Bevan C. Bennett bevan at fulcrummicro.com
Tue Jul 15 00:37:48 BST 2008


    [ The following text is in the "ISO-8859-1" character set. ]
    [ Your display is set for the "ISO-8859-10" character set.  ]
    [ Some special characters may be displayed incorrectly. ]

Rayson Ho wrote:
> Can you make sure that "/usr/local/grid-6.0/bin/lx24-amd64/qrsh" is a
> 64-bit binary?? One quick way is to run "file
> /usr/local/grid-6.0/bin/lx24-amd64/qrsh".

[bevan at osmium ~]> which qrsh
/usr/local/grid-6.0/bin/lx24-amd64/qrsh
[bevan at osmium ~]> file /usr/local/grid-6.0/bin/lx24-amd64/qrsh
/usr/local/grid-6.0/bin/lx24-amd64/qrsh: symbolic link to `qsh'
[bevan at osmium ~]> file /usr/local/grid-6.0/bin/lx24-amd64/qsh
/usr/local/grid-6.0/bin/lx24-amd64/qsh: ELF 64-bit LSB executable, AMD
x86-64, version 1 (SYSV), for GNU/Linux 2.4.0, dynamically linked (uses
shared libs), not stripped

> If qrsh is a 32-bit binary, then the problem is same as issue 2543.
> Otherwise, it may be something new.
> 
> Also, giving us the last few lines of "strace -f qrsh -o
> /home/user/bevan/test-output" would help.

I removed the gettimeofday entries...

read(3,
"=$\332i\202\37F\255v\254E\362\36\253R\v\327%\246\261I9\2063\331\210o\312\246\344\251\325",
32) = 32
read(3, "\27\3\1\0000", 5)              = 5
read(3,
"S\31{\226\217\372\217E\231t\316\204\f\337[5\337N!,\'\24\305\335V\307)\371K\370z\370"...,
48) = 48
time(NULL)                              = 1216078404
time([1216078404])                      = 1216078404
rt_sigaction(SIGPIPE, {SIG_DFL}, NULL, 8) = 0
stat("/usr/local/grid-6.0/default/common/sge_aliases",
{st_mode=S_IFREG|0644, st_size=1608, ...}) = 0
open("/usr/local/grid-6.0/default/common/sge_aliases", O_RDONLY) = 4
fstat(4, {st_mode=S_IFREG|0644, st_size=1608, ...}) = 0
mmap(NULL, 32768, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1,
0) = 0x2a9556c000
read(4, "#___INFO__MARK_BEGIN__\n#########"..., 32768) = 1608
read(4, "", 32768)                      = 0
close(4)                                = 0
munmap(0x2a9556c000, 32768)             = 0
stat("/home/user/bevan/.sge_aliases", 0x7fbfff5b50) = -1 ENOENT (No such
file or directory)
getcwd("/mnt/fulcrum/home/user/bevan", 1025) = 29
open("/etc/hosts", O_RDONLY)            = 4
fcntl(4, F_GETFD)                       = 0
fcntl(4, F_SETFD, FD_CLOEXEC)           = 0
fstat(4, {st_mode=S_IFREG|0644, st_size=204, ...}) = 0
mmap(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0)
= 0x2a9556c000
read(4, "# Do not remove the following li"..., 4096) = 204
read(4, "", 4096)                       = 0
close(4)                                = 0
munmap(0x2a9556c000, 4096)              = 0
socket(PF_INET, SOCK_DGRAM, IPPROTO_IP) = 4
connect(4, {sa_family=AF_INET, sin_port=htons(53),
sin_addr=inet_addr("10.0.80.12")}, 28) = 0
fcntl(4, F_GETFL)                       = 0x2 (flags O_RDWR)
fcntl(4, F_SETFL, O_RDWR|O_NONBLOCK)    = 0
poll([{fd=4, events=POLLOUT, revents=POLLOUT}], 1, 0) = 1
sendto(4, "\7\225\1\0\0\1\0\0\0\0\0\0\5vidar\10internal\5avls"..., 42,
MSG_NOSIGNAL, NULL, 0) = 42
poll([{fd=4, events=POLLIN, revents=POLLIN}], 1, 5000) = 1
ioctl(4, FIONREAD, [183])               = 0
recvfrom(4, "\7\225\205\200\0\1\0\1\0\3\0\3\5vidar\10internal\5avls"...,
1024, 0, {sa_family=AF_INET, sin_port=htons(53),
sin_addr=inet_addr("10.0.80.12")}, [16]) = 183
close(4)                                = 0
socket(PF_INET, SOCK_STREAM, IPPROTO_IP) = 4
setsockopt(4, SOL_SOCKET, SO_REUSEADDR, [1], 4) = 0
fcntl(4, F_SETFL, O_RDONLY|O_NONBLOCK)  = 0
connect(4, {sa_family=AF_INET, sin_port=htons(536),
sin_addr=inet_addr("10.0.80.10")}, 16) = -1 EINPROGRESS (Operation now
in progress)
select(5, [4], [4], NULL, {1, 0})       = 1 (out [4], left {0, 999000})
getsockopt(4, SOL_SOCKET, SO_ERROR, [17179869184], [4]) = 0
setsockopt(4, SOL_TCP, TCP_NODELAY, [1], 4) = 0
write(4, "<gmsh><dl>239</dl></gmsh><cm ver"..., 264) = 264
read(4, 0x6a4460, 22)                   = -1 EAGAIN (Resource
temporarily unavailable)
select(5, [4], [], NULL, {1, 0})        = 1 (in [4], left {0, 998000})
read(4, "<gmsh><dl>261</dl></gm", 22)   = 22
read(4, "s", 1)                         = 1
read(4, "h", 1)                         = 1
read(4, ">", 1)                         = 1
read(4, "<crm version=\"0.1\"><cs condition"..., 261) = 261
write(4, "<gmsh><dl>99</dl></gmsh>", 24) = 24
write(4, "<mih version=\"0.1\"><mid>1</mid><"..., 99) = 99
write(4, "\0\0\0\0\20\2\0\0\0\0\0\1\0\0\0\n\20\0
\0\0\0\0\0\0\0\0\0\0\0\0\1"..., 153) = 153
select(5, [4], [], NULL, {1, 0})        = 1 (in [4], left {0, 999000})
read(4, "<gmsh><dl>97</dl></gms", 22)   = 22
read(4, "h", 1)                         = 1
read(4, ">", 1)                         = 1
read(4, "<mih version=\"0.1\"><mid>1</mid><"..., 97) = 97
read(4, 0x6a4380, 35)                   = -1 EAGAIN (Resource
temporarily unavailable)
select(5, [4], [], NULL, {1, 0})        = 1 (in [4], left {0, 999000})
read(4, "<am version=\"0.1\"><mid>1</mid></"..., 35) = 35
select(5, [4], [], NULL, {1, 0})        = 1 (in [4], left {1, 0})
read(4, "<gmsh><dl>100</dl></gm", 22)   = 22
read(4, "s", 1)                         = 1
read(4, "h", 1)                         = 1
read(4, ">", 1)                         = 1
read(4, "<mih version=\"0.1\"><mid>2</mid><"..., 100) = 100
read(4,
"\0\0\0\0\20\2\0\0\0\0\0\1\0\0\0\n\0\0\0\0\0\0\0\1\0\0\0\2qmas"...,
2145) = 2145
futex(0x6272e0, FUTEX_WAKE, 2147483647) = 0
socket(PF_INET, SOCK_STREAM, IPPROTO_IP) = 5
bind(5, {sa_family=AF_INET, sin_port=htons(0),
sin_addr=inet_addr("0.0.0.0")}, 16) = 0
getsockname(5, {sa_family=AF_INET, sin_port=htons(42478),
sin_addr=inet_addr("0.0.0.0")}, [13835040600535072784]) = 0
listen(5, 1)                            = 0
select(5, [4], [4], NULL, {1, 0})       = 1 (out [4], left {1, 0})
write(4, "<gmsh><dl>100</dl></gmsh>", 25) = 25
write(4, "<mih version=\"0.1\"><mid>2</mid><"..., 100) = 100
write(4, "\0\0\0\0\20\2\0\0\0\0\1\2\0\0\0\5\20\0
\0\0\0\0\1\0\0\0\1lp\0\0"..., 2263) = 2263
select(5, [4], [], NULL, {1, 0})        = 1 (in [4], left {0, 998000})
read(4, "<gmsh><dl>97</dl></gms", 22)   = 22
read(4, "h", 1)                         = 1
read(4, ">", 1)                         = 1
read(4, "<mih version=\"0.1\"><mid>3</mid><"..., 97) = 97
read(4, "<am version=\"0.1\"><mid>2</mid></"..., 35) = 35
select(5, [4], [], NULL, {1, 0})        = 1 (in [4], left {0, 968000})
read(4, "<gmsh><dl>100</dl></gm", 22)   = 22
read(4, "s", 1)                         = 1
read(4, "h", 1)                         = 1
read(4, ">", 1)                         = 1
read(4, "<mih version=\"0.1\"><mid>4</mid><"..., 100) = 100
read(4, "\0\0\0\0\20\2\0\0\0\0\1\2\0\0\0\5\0\0\0\0\0\0\0\1\0\0\0\1Job
"..., 2852) = 2852
select(5, [4], [4], NULL, {1, 0})       = 1 (out [4], left {1, 0})
write(4, "<gmsh><dl>98</dl></gmsh>", 24) = 24
write(4, "<mih version=\"0.1\"><mid>3</mid><"..., 98) = 98
write(4, "<ccm version=\"0.1\"></ccm>", 25) = 25
select(5, [4], [], NULL, {1, 0})        = 1 (in [4], left {0, 998000})
read(4, "<gmsh><dl>99</dl></gms", 22)   = 22
read(4, "h", 1)                         = 1
read(4, ">", 1)                         = 1
read(4, "<mih version=\"0.1\"><mid>5</mid><"..., 99) = 99
read(4, "<ccrm version=\"0.1\"></ccrm>", 27) = 27
shutdown(4, 2 /* send and receive */)   = 0
close(4)                                = 0
select(6, [5], NULL, NULL, {4, 0})      = 1 (in [5], left {3, 717000})
accept(5, 0, NULL)                      = 4
read(4, "1", 1)                         = 1
read(4, ":", 1)                         = 1
read(4, "c", 1)                         = 1
read(4, "a", 1)                         = 1
read(4, "n", 1)                         = 1
read(4, "\'", 1)                        = 1
read(4, "t", 1)                         = 1
read(4, " ", 1)                         = 1
read(4, "s", 1)                         = 1
read(4, "t", 1)                         = 1
read(4, "a", 1)                         = 1
read(4, "t", 1)                         = 1
read(4, "(", 1)                         = 1
read(4, ")", 1)                         = 1
read(4, " ", 1)                         = 1
read(4, "\"", 1)                        = 1
read(4, "/", 1)                         = 1
read(4, "h", 1)                         = 1
read(4, "o", 1)                         = 1
read(4, "m", 1)                         = 1
read(4, "e", 1)                         = 1
read(4, "/", 1)                         = 1
read(4, "u", 1)                         = 1
read(4, "s", 1)                         = 1
read(4, "e", 1)                         = 1
read(4, "r", 1)                         = 1
read(4, "/", 1)                         = 1
read(4, "b", 1)                         = 1
read(4, "e", 1)                         = 1
read(4, "v", 1)                         = 1
read(4, "a", 1)                         = 1
read(4, "n", 1)                         = 1
read(4, "/", 1)                         = 1
read(4, "t", 1)                         = 1
read(4, "e", 1)                         = 1
read(4, "s", 1)                         = 1
read(4, "t", 1)                         = 1
read(4, "-", 1)                         = 1
read(4, "o", 1)                         = 1
read(4, "u", 1)                         = 1
read(4, "t", 1)                         = 1
read(4, "p", 1)                         = 1
read(4, "u", 1)                         = 1
read(4, "t", 1)                         = 1
read(4, "\"", 1)                        = 1
read(4, " ", 1)                         = 1
read(4, "a", 1)                         = 1
read(4, "s", 1)                         = 1
read(4, " ", 1)                         = 1
read(4, "s", 1)                         = 1
read(4, "t", 1)                         = 1
read(4, "d", 1)                         = 1
read(4, "o", 1)                         = 1
read(4, "u", 1)                         = 1
read(4, "t", 1)                         = 1
read(4, "_", 1)                         = 1
read(4, "p", 1)                         = 1
read(4, "a", 1)                         = 1
read(4, "t", 1)                         = 1
read(4, "h", 1)                         = 1
read(4, ":", 1)                         = 1
read(4, " ", 1)                         = 1
read(4, "V", 1)                         = 1
read(4, "a", 1)                         = 1
read(4, "l", 1)                         = 1
read(4, "u", 1)                         = 1
read(4, "e", 1)                         = 1
read(4, " ", 1)                         = 1
read(4, "t", 1)                         = 1
read(4, "o", 1)                         = 1
read(4, "o", 1)                         = 1
read(4, " ", 1)                         = 1
read(4, "l", 1)                         = 1
read(4, "a", 1)                         = 1
read(4, "r", 1)                         = 1
read(4, "g", 1)                         = 1
read(4, "e", 1)                         = 1
read(4, " ", 1)                         = 1
read(4, "f", 1)                         = 1
read(4, "o", 1)                         = 1
read(4, "r", 1)                         = 1
read(4, " ", 1)                         = 1
read(4, "d", 1)                         = 1
read(4, "e", 1)                         = 1
read(4, "f", 1)                         = 1
read(4, "i", 1)                         = 1
read(4, "n", 1)                         = 1
read(4, "e", 1)                         = 1
read(4, "d", 1)                         = 1
read(4, " ", 1)                         = 1
read(4, "d", 1)                         = 1
read(4, "a", 1)                         = 1
read(4, "t", 1)                         = 1
read(4, "a", 1)                         = 1
read(4, " ", 1)                         = 1
read(4, "t", 1)                         = 1
read(4, "y", 1)                         = 1
read(4, "p", 1)                         = 1
read(4, "e", 1)                         = 1
read(4, " ", 1)                         = 1
read(4, "K", 1)                         = 1
read(4, "R", 1)                         = 1
read(4, "B", 1)                         = 1
read(4, "5", 1)                         = 1
read(4, "C", 1)                         = 1
read(4, "C", 1)                         = 1
read(4, "N", 1)                         = 1
read(4, "A", 1)                         = 1
read(4, "M", 1)                         = 1
read(4, "E", 1)                         = 1
read(4, "=", 1)                         = 1
read(4, "n", 1)                         = 1
read(4, "o", 1)                         = 1
read(4, "n", 1)                         = 1
read(4, "e", 1)                         = 1
read(4, " ", 1)                         = 1
read(4, "u", 1)                         = 1
read(4, "i", 1)                         = 1
read(4, "d", 1)                         = 1
read(4, "=", 1)                         = 1
read(4, "0", 1)                         = 1
read(4, " ", 1)                         = 1
read(4, "g", 1)                         = 1
read(4, "i", 1)                         = 1
read(4, "d", 1)                         = 1
read(4, "=", 1)                         = 1
read(4, "0", 1)                         = 1
read(4, " ", 1)                         = 1
read(4, "1", 1)                         = 1
read(4, "0", 1)                         = 1
read(4, "0", 1)                         = 1
read(4, "4", 1)                         = 1
read(4, " ", 1)                         = 1
read(4, "1", 1)                         = 1
read(4, "0", 1)                         = 1
read(4, "0", 1)                         = 1
read(4, "8", 1)                         = 1
read(4, " ", 1)                         = 1
read(4, "1", 1)                         = 1
read(4, "0", 1)                         = 1
read(4, "0", 1)                         = 1
read(4, "9", 1)                         = 1
read(4, " ", 1)                         = 1
read(4, "1", 1)                         = 1
read(4, "0", 1)                         = 1
read(4, "3", 1)                         = 1
read(4, "0", 1)                         = 1
read(4, " ", 1)                         = 1
read(4, "5", 1)                         = 1
read(4, "1", 1)                         = 1
read(4, "2", 1)                         = 1
read(4, "6", 1)                         = 1
read(4, " ", 1)                         = 1
read(4, "9", 1)                         = 1
read(4, "0", 1)                         = 1
read(4, "7", 1)                         = 1
read(4, "2", 1)                         = 1
read(4, " ", 1)                         = 1
read(4, "9", 1)                         = 1
read(4, "0", 1)                         = 1
read(4, "7", 1)                         = 1
read(4, "6", 1)                         = 1
read(4, " ", 1)                         = 1
read(4, "9", 1)                         = 1
read(4, "0", 1)                         = 1
read(4, "8", 1)                         = 1
read(4, "5", 1)                         = 1
read(4, " ", 1)                         = 1
read(4, "\0", 1)                        = 1
close(4)                                = 0
futex(0x625dc8, FUTEX_WAKE, 2147483647) = 0
write(2, "error: 1: can\'t stat() \"/home/us"..., 178error: 1: can't
stat() "/home/user/bevan/test-output" as stdout_path: Value too large
for defined data type KRB5CCNAME=none uid=0 gid=0 1004 1008 1009 1030
5126 9072 9076 9085 ) = 178
socket(PF_INET, SOCK_STREAM, IPPROTO_IP) = 4
setsockopt(4, SOL_SOCKET, SO_REUSEADDR, [1], 4) = 0
fcntl(4, F_SETFL, O_RDONLY|O_NONBLOCK)  = 0
connect(4, {sa_family=AF_INET, sin_port=htons(536),
sin_addr=inet_addr("10.0.80.10")}, 16) = -1 EINPROGRESS (Operation now
in progress)
select(5, [4], [4], NULL, {1, 0})       = 1 (out [4], left {1, 0})
getsockopt(4, SOL_SOCKET, SO_ERROR, [17179869184], [4]) = 0
setsockopt(4, SOL_TCP, TCP_NODELAY, [1], 4) = 0
write(4, "<gmsh><dl>247</dl></gmsh><cm ver"..., 272) = 272
read(4, 0x6a8260, 22)                   = -1 EAGAIN (Resource
temporarily unavailable)
select(5, [4], [], NULL, {1, 0})        = 1 (in [4], left {0, 996000})
read(4, "<gmsh><dl>261</dl></gm", 22)   = 22
read(4, "s", 1)                         = 1
read(4, "h", 1)                         = 1
read(4, ">", 1)                         = 1
read(4, "<crm version=\"0.1\"><cs condition"..., 261) = 261
write(4, "<gmsh><dl>99</dl></gmsh>", 24) = 24
write(4, "<mih version=\"0.1\"><mid>1</mid><"..., 99) = 99
write(4, "\0\0\0\0\20\2\0\0\0\0\0\3\0\0\0\5\20\0
\0\0\0\0\1\0\0\0\1lp\0\0"..., 179) = 179
select(5, [4], [], NULL, {1, 0})        = 1 (in [4], left {0, 994000})
read(4, "<gmsh><dl>97</dl></gms", 22)   = 22
read(4, "h", 1)                         = 1
read(4, ">", 1)                         = 1
read(4, "<mih version=\"0.1\"><mid>1</mid><"..., 97) = 97
read(4, "<am version=\"0.1\"><mid>1</mid></"..., 35) = 35
select(5, [4], [], NULL, {1, 0})        = 1 (in [4], left {0, 999000})
read(4, "<gmsh><dl>99</dl></gms", 22)   = 22
read(4, "h", 1)                         = 1
read(4, ">", 1)                         = 1
read(4, "<mih version=\"0.1\"><mid>2</mid><"..., 99) = 99
read(4,
"\0\0\0\0\20\2\0\0\0\0\0\3\0\0\0\5\0\0\0\0\0\0\0\0\0\0\0\1\0\0\0\1"...,
153) = 153
exit_group(1)

---------------------------------------------------------------------
To unsubscribe, e-mail: users-unsubscribe at gridengine.sunsource.net
For additional commands, e-mail: users-help at gridengine.sunsource.net




More information about the gridengine-users mailing list