[GE Portal] Fasta- No Text box for 2nd Input file

Melvin Koh Melvin.Koh at sun.com
Tue May 13 04:31:24 BST 2008


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I'm not sure why you get the problem. How often does it happen? Is the 
job completed successfully? You should have some output files in the 
sleeper project folder if the job runs without error.

Sangamesh B wrote:
> Thanks for the response,
> 
> I'm facing one more problem with GEP.
> 
> After submitting a job( say sleeper.sh) "Sun TCP New Project Status" 
> window appears. But it is blank, instead containing the job-submission 
> info. 
> 
> Sometimes it works properly showing "Your job $JOB_ID submitted". I 
> checked submitting sleeper script thru qsub. It works. Restarting the 
> portal-server/system didn't solve the problem.
> 
> In the user's home dir, the folder "Sleeper.sh12052008173737" gets 
> created with no files in it.
> 
> May I know what's causing this?
> 
> Shall I reinstall/redo the GEP config?
> 
> Thanks,
> Sangamesh
> 
> On 5/12/08, *Melvin Koh* <Melvin.Koh at sun.com 
> <mailto:Melvin.Koh at sun.com>> wrote:
> 
>     Sangamesh,
> 
>     The form can be modified. It is the file
>     "<GEP_dir>/apps/A1064135261085/.suntcp-form". The form is basically
>     constructed using HTML and Javascript, so just add a new HTML
>     textbox as appropriate. GEP will pass the form values to the
>     "fasta.sh" submit script located in the same directory. You will
>     also need to modify this script to handle the newly added input
>     parameter.
> 
>     For adding a new applications to GEP, we have a simple tutorial:
>     http://apstc.sun.com.sg/research/projects/gep/download/addnewapp.pdf
> 
> 
>     Sangamesh B wrote:
> 
>         Hi gepusers,
> 
>            I installed Bio Cluster Grid 1.5 on RHEL 3 AS U4.
> 
>         A sample sleeper program executes fine. So BCG is configured fine.
> 
>         I'm facing probelm with Fasta program. It requires two input
>         files( i.e one sequence file and a library file), but the fasta
>         job submission window has a provision for only one input file.
>         Where to mention the other input?
> 
>         Is there a procedure to add one more text box?
> 
>         Is there document for adding new application?
> 
>         Thanks in advance,
>         Sangamesh
> 

-- 
-----------------------------------------
Melvin Koh Chee Kian
Grid Solution Architect
APSTC and Global Systems Practice
Sun Microsystems Inc.
Website: http://apstc.sun.com.sg/
-----------------------------------------



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