[GE Portal] Fasta- No Text box for 2nd Input file

Sangamesh B forum.san at gmail.com
Thu May 15 12:43:52 BST 2008


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   Still the problem is not solved. The window "Sun TCP New Project Status"
appears without the job-info.

   May I know, is this an applet/servlet or html page. Where the code is
written for this page so that I can debug it.

Thanks,
Sangamesh

On 5/13/08, Sangamesh B <forum.san at gmail.com> wrote:
>
> After the complete installation of Bio Cluster Grid, the job submission was
> not happening. The
> "Sun TCP New Project Status" window was blank. Yesterday it was working for
> every sleeper job till restarting the system. After restart, every time it
> didn't show the  job-info on the window.
>
> Before restart, it produced the output file. After restart, only folder
> gets created, but the job doesn't submit. "qstat -f" confirms this.
>
> Thanks,
> Sangamesh
> On Tue, May 13, 2008 at 9:01 AM, Melvin Koh <Melvin.Koh at sun.com> wrote:
>
>> I'm not sure why you get the problem. How often does it happen? Is the job
>> completed successfully? You should have some output files in the sleeper
>> project folder if the job runs without error.
>>
>> Sangamesh B wrote:
>>
>>> Thanks for the response,
>>>
>>> I'm facing one more problem with GEP.
>>>
>>> After submitting a job( say sleeper.sh) "Sun TCP New Project Status"
>>> window appears. But it is blank, instead containing the job-submission info.
>>>
>>> Sometimes it works properly showing "Your job $JOB_ID submitted". I
>>> checked submitting sleeper script thru qsub. It works. Restarting the
>>> portal-server/system didn't solve the problem.
>>>
>>> In the user's home dir, the folder "Sleeper.sh12052008173737" gets
>>> created with no files in it.
>>>
>>> May I know what's causing this?
>>>
>>> Shall I reinstall/redo the GEP config?
>>>
>>> Thanks,
>>> Sangamesh
>>>
>>> On 5/12/08, *Melvin Koh* <Melvin.Koh at sun.com <mailto:Melvin.Koh at sun.com>>
>>> wrote:
>>>
>>>    Sangamesh,
>>>
>>>    The form can be modified. It is the file
>>>    "<GEP_dir>/apps/A1064135261085/.suntcp-form". The form is basically
>>>    constructed using HTML and Javascript, so just add a new HTML
>>>    textbox as appropriate. GEP will pass the form values to the
>>>    "fasta.sh" submit script located in the same directory. You will
>>>    also need to modify this script to handle the newly added input
>>>    parameter.
>>>
>>>    For adding a new applications to GEP, we have a simple tutorial:
>>>    http://apstc.sun.com.sg/research/projects/gep/download/addnewapp.pdf
>>>
>>>
>>>    Sangamesh B wrote:
>>>
>>>        Hi gepusers,
>>>
>>>           I installed Bio Cluster Grid 1.5 on RHEL 3 AS U4.
>>>
>>>        A sample sleeper program executes fine. So BCG is configured fine.
>>>
>>>        I'm facing probelm with Fasta program. It requires two input
>>>        files( i.e one sequence file and a library file), but the fasta
>>>        job submission window has a provision for only one input file.
>>>        Where to mention the other input?
>>>
>>>        Is there a procedure to add one more text box?
>>>
>>>        Is there document for adding new application?
>>>
>>>        Thanks in advance,
>>>        Sangamesh
>>>
>>>
>> --
>> -----------------------------------------
>> Melvin Koh Chee Kian
>> Grid Solution Architect
>> APSTC and Global Systems Practice
>> Sun Microsystems Inc.
>> Website: http://apstc.sun.com.sg/
>> -----------------------------------------
>>
>
>



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