[GE users] merging stdout

reuti reuti at staff.uni-marburg.de
Wed Nov 12 10:51:11 GMT 2008


Am 12.11.2008 um 04:17 schrieb magawake:

> I have an array job which basically creates 10 separate outputs foo. 
> ($SGE_JOB).($TASK_ID)
>
> What I do after the job is, "./combine $SGE_JOB"

What about submitting this as a followup job:

qsub -hold_jid <JOB_ID_OF_THE_ARRAY_JOB> combine

It will wait (i.e. being on hold), until all tasks have finished.

-- Reuti


> WHich basically, take all the TASK_ID in order and then merges them  
> in order. Order is important.
>
>
> But I have to have a separate script in "combine". I would instead  
> just like to do a taskwait, on ./combine process but I would like  
> to preserver the $SGE_JOB on a separate process. Is that possible  
> to do? Is there any example anywhere?
>
> TIA
>
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