[GE users] [OT] Running R under SGE and OpenMPI

Sean Davis sdavis2 at mail.nih.gov
Thu Oct 9 16:21:58 BST 2008


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On Thu, Oct 9, 2008 at 11:17 AM, Davide Cittaro
<davide.cittaro at ifom-ieo-campus.it> wrote:
>
> On Oct 9, 2008, at 5:10 PM, Sean Davis wrote:
>>
>>
>> openmpi 1.2.7 (built with --with-sge)
>> sge 6.2
>
> Since I'm migrating to openmpi, did you patched it? I can't see a --with-sge
> option in configure...

Nope.  Just blindly followed the FAQ on the openMPI site about SGE
integration.  ompi_info does show that gridengine components are
indeed installed.

> ompi_info | grep gridengine
[pressa:20337] mca: base: component_find: unable to open ras tm: file
not found (ignored)
[pressa:20337] mca: base: component_find: unable to open pls tm: file
not found (ignored)
                 MCA ras: gridengine (MCA v1.0, API v1.3, Component v1.2.7)
                 MCA pls: gridengine (MCA v1.0, API v1.3, Component v1.2.7)

Sean

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