[GE users] [OT] Running R under SGE and OpenMPI

Rayson Ho rayrayson at gmail.com
Thu Oct 9 16:31:14 BST 2008


    [ The following text is in the "ISO-8859-1" character set. ]
    [ Your display is set for the "ISO-8859-10" character set.  ]
    [ Some special characters may be displayed incorrectly. ]

On 10/9/08, Sean Davis <sdavis2 at mail.nih.gov> wrote:
> I can confirm that there is no --with-sge in the configure --help
> output, even in 1.2.7.

Yes, that's only in 1.3.

BTW, how is your PE defined?? The error message tells you that the
remote execd is not starting the remote tasks:

  error: got no connection within 60 seconds
  [octopus:21290] ERROR: A daemon on node shakespeare.nci.nih.gov failed
  to start as expected.

Rayson


>
> Sean
>
> ---------------------------------------------------------------------
> To unsubscribe, e-mail: users-unsubscribe at gridengine.sunsource.net
> For additional commands, e-mail: users-help at gridengine.sunsource.net
>
>

---------------------------------------------------------------------
To unsubscribe, e-mail: users-unsubscribe at gridengine.sunsource.net
For additional commands, e-mail: users-help at gridengine.sunsource.net




More information about the gridengine-users mailing list