[GE users] [OT] Running R under SGE and OpenMPI

Sean Davis sdavis2 at mail.nih.gov
Thu Oct 9 16:47:39 BST 2008


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On Thu, Oct 9, 2008 at 11:31 AM, Rayson Ho <rayrayson at gmail.com> wrote:
> On 10/9/08, Sean Davis <sdavis2 at mail.nih.gov> wrote:
>> I can confirm that there is no --with-sge in the configure --help
>> output, even in 1.2.7.
>
> Yes, that's only in 1.3.
>
> BTW, how is your PE defined?? The error message tells you that the
> remote execd is not starting the remote tasks:
>
>  error: got no connection within 60 seconds
>  [octopus:21290] ERROR: A daemon on node shakespeare.nci.nih.gov failed
>  to start as expected.

Thanks, Rayson.

> qconf -sp orte
pe_name            orte
slots              999
user_lists         NONE
xuser_lists        NONE
start_proc_args    /bin/true
stop_proc_args     /bin/true
allocation_rule    $round_robin
control_slaves     TRUE
job_is_first_task  FALSE
urgency_slots      min
accounting_summary FALSE

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