[GE users] [OT] Running R under SGE and OpenMPI

Reuti reuti at staff.uni-marburg.de
Thu Oct 9 17:42:22 BST 2008


Sean,

Am 09.10.2008 um 17:47 schrieb Sean Davis:

> On Thu, Oct 9, 2008 at 11:31 AM, Rayson Ho <rayrayson at gmail.com>  
> wrote:
>> On 10/9/08, Sean Davis <sdavis2 at mail.nih.gov> wrote:
>>> I can confirm that there is no --with-sge in the configure --help
>>> output, even in 1.2.7.
>>
>> Yes, that's only in 1.3.
>>
>> BTW, how is your PE defined?? The error message tells you that the
>> remote execd is not starting the remote tasks:
>>
>>  error: got no connection within 60 seconds
>>  [octopus:21290] ERROR: A daemon on node shakespeare.nci.nih.gov  
>> failed
>>  to start as expected.

is there any firewall installed on the machines?

-- Reuti

> Thanks, Rayson.
>
>> qconf -sp orte
> pe_name            orte
> slots              999
> user_lists         NONE
> xuser_lists        NONE
> start_proc_args    /bin/true
> stop_proc_args     /bin/true
> allocation_rule    $round_robin
> control_slaves     TRUE
> job_is_first_task  FALSE
> urgency_slots      min
> accounting_summary FALSE
>
> ---------------------------------------------------------------------
> To unsubscribe, e-mail: users-unsubscribe at gridengine.sunsource.net
> For additional commands, e-mail: users-help at gridengine.sunsource.net
>


---------------------------------------------------------------------
To unsubscribe, e-mail: users-unsubscribe at gridengine.sunsource.net
For additional commands, e-mail: users-help at gridengine.sunsource.net




More information about the gridengine-users mailing list