[GE users] [OT] Running R under SGE and OpenMPI

Rayson Ho rayrayson at gmail.com
Thu Oct 9 20:04:54 BST 2008

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On 10/9/08, Sean Davis <sdavis2 at mail.nih.gov> wrote:
> However, there is no output in any output stream.
> And if I log into shakespeare and qrsh -q all.q at octopus, I immediately
> get a slot, so there isn't a "direct" problem with connecting.

The lack of any qrsh output already tells us that qrsh is not invoked
from inside your job. Looks like a problem with the OpenMPI
installation -- mpirun should invoke qrsh.

And from the warning message "...unable to open ras tm", it looks like
that OpenMPI is using TM as the remote task start protocol instead of


> Again, thanks.
> Sean

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