[GE users] Job_Scripts directory

Bradford, Matthew matthew.bradford at eds.com
Thu Oct 16 15:53:48 BST 2008

I think wrapping qsub in some way would be our best bet.

Thanks for the info.



>-----Original Message-----
>From: Reuti [mailto:reuti at staff.uni-marburg.de] 
>Sent: 16 October 2008 15:50
>To: users at gridengine.sunsource.net
>Subject: Re: [GE users] Job_Scripts directory
>Am 16.10.2008 um 16:25 schrieb Bradford, Matthew:
>>> -----Original Message-----
>>> From: Reuti [mailto:reuti at staff.uni-marburg.de]
>>> Sent: 16 October 2008 14:29
>>> To: users at gridengine.sunsource.net
>>> Subject: Re: [GE users] Job_Scripts directory
>>> Hi,
>>> Am 16.10.2008 um 14:46 schrieb Bradford, Matthew:
>>>> We recently upgraded our scheduler from 6.0u8 to 6.2, and 
>>>> odd has happened.
>>>> Whereas we used to see all the job_scripts for pending and running 
>>>> jobs in <SGE_ROOT>/default/spool/qmaster/job_scripts, we now have 
>>>> nothing in that directory.
>>>> The cluster is working fine, with users happily submitting
>>> jobs which
>>>> execute cleanly. When jobs start executing the job_scripts
>>> appear  in
>>>> the /var/spool/sge on each execution node, but something must have 
>>>> changed to no longer have the files in the qmaster directory as 
>>>> well.
>>>> Any thoughts would be much appreciated.
>>> seems, that for security/performance reasons it's now also 
>put in the 
>>> BerkelyDB - unless you selected classic spooling.
>>> Only for the running jobs, you will find it in the spool 
>directory of 
>>> the node like before.
>>> -- Reuti
>> Reuti,
>> Thanks for the info. I don't suppose you know of an easy way to get 
>> hold of the contents of a job script prior to, or even during, 
>> execution do you?
>During execution it's available in the spool directory of the 
>node like before. Maybe you could use a qsub-wrapper to copy 
>it to any localtion you like, or try to fall back to classic spooling.
>-- Reuti
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