[GE users] SGEfy a job

Sean Davis sdavis2 at mail.nih.gov
Wed Sep 17 12:42:08 BST 2008


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On Wed, Sep 17, 2008 at 7:33 AM, Mag Gam <magawake at gmail.com> wrote:
> Hello,
>
> I have a job which does a reactive fluid flow simulation and it
> outputs several result files onto  a shared NFS filesystem. The way I
> am doing it now is, splitting the job into n pieces and SSHing it over
> to x servers and having each server run a small portion of the job.
> This is the "poor" man's way of doing it. I was wondering if there is
> a document or procedure I can follow to make my job run with SGE.

Split your files as normal and give them names like:

file_1..file_N

Then, submit an array job.  See the man page for qsub and the -t argument.

Sean

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