[GE users] SGEfy a job

Mag Gam magawake at gmail.com
Thu Sep 18 11:02:52 BST 2008


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Thanks for the tips and advice. I was able to convert my job.
Actually, I split my job into 1 single job and everytime I need to add
more parameters I simple changes the arguments and it works very well.

TIA




On Wed, Sep 17, 2008 at 7:42 AM, Sean Davis <sdavis2 at mail.nih.gov> wrote:
> On Wed, Sep 17, 2008 at 7:33 AM, Mag Gam <magawake at gmail.com> wrote:
>> Hello,
>>
>> I have a job which does a reactive fluid flow simulation and it
>> outputs several result files onto  a shared NFS filesystem. The way I
>> am doing it now is, splitting the job into n pieces and SSHing it over
>> to x servers and having each server run a small portion of the job.
>> This is the "poor" man's way of doing it. I was wondering if there is
>> a document or procedure I can follow to make my job run with SGE.
>
> Split your files as normal and give them names like:
>
> file_1..file_N
>
> Then, submit an array job.  See the man page for qsub and the -t argument.
>
> Sean
>
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