[GE users] path or filename too long

Ron Chen ron_chen_123 at yahoo.com
Sun Sep 21 15:48:16 BST 2008


On 9/21/08, Iwona Sakrejda <isakrejda at lbl.gov> wrote:
> > do you have a large filesystem? Can it be this, and you need to upgrade
> SGE:
> > 
> http://gridengine.sunsource.net/issues/show_bug.cgi?id=2543
> > 
> 
> That's probably it. It's a 29TB GPFS filesystem.....

Just want to be sure: if it fails for all jobs writing to the large partition, then it is issue 2543; otherwise, it can be something else!

May be it's because that node is 32-bit while all other nodes are 64-bit?

 -Ron


> 
> Iwona
> 
> 
> > 
> > -- Reuti
> > 
> > 
> > 
> > > Then, can you use "touch" or a text editor to create this file, and
> > > try again with filestat??
> > > 
> > > If filestat fails in a similar way, you should be able to use strace
> > > to find out the reason of the failure.
> > > 
> > > BTW, in the code (daemons/shepherd/builtin_starter.c,
> function
> > > build_path), when SGE_STAT fails, shepherd prints that error message
> > > in the log and exits. Also, if you are able to compile your own
> > > version of shepherd, try putting a few debug printfs in that function
> > > may help debug the problem.
> > > 
> > > Rayson
> > > 
> > > 
> > > 
> > > 
> > > > 
> > > > I checked and in this directory the user has 519 other output files
> with
> > > > similar
> > > > names  that were created today....
> > > > 
> > > > Iwona
> > > > 
> > > > 
> > > > 
> > > > > Rayson
> > > > > 
> > > > > 
> > > > > 
> > > > > On 9/20/08, Iwona Sakrejda <isakrejda at lbl.gov> wrote:
> > > > > 
> > > > > 
> > > > > 
> > > > > > Hi,
> > > > > > 
> > > > > > I noticed one of the jobs going into Eqw with a message that
> follows.
> > > > > > What are the limits?
> > > > > > 
> > > > > > Thank You....
> > > > > > 
> > > > > > Iwona
> > > > > > 
> > > > > > 
> > > > > > 09/19/2008 17:56:10 [35140:7379]: can't stat()
> > > > > > 
> > > > > > 
> > > > > 
> > > >
> "/eliza13/starhf/aknospe/6ele/out/ep_624_st_physics_adc_6038085_raw_3060001_11BED037272D8747C7A9516B0A4C1D9D_11.out"
> > > > 
> > > > > 
> > > > > > as stdout_path: Value too large for defined data type
> KRB5CCNAME=none
> > > > > > uid=35140 gid=4002 4002 5008 5463 99999
> > > > > > 09/19/2008 17:56:10 [171:7378]: wait3 returned 7379 (status: 6656;
> > > > > > WIFSIGNALED: 0, WIFEXITED: 1, WEXITSTATUS: 26/
> > > > > > 09/19/2008 17:56:10 [171:7378]: prolog exited with exit status 26
> > > > > > 09/19/2008 17:56:10 [171:7378]: reaped "prolog" with pid 7379
> > > > > > 
> > > > > > 09/19/2008 17:56:10 [171:7378]: prolog exited not due to signal
> > > > > > 09/19/2008 17:56:10 [171:7378]: prolog exited with status 26
> > > > > > 09/19/2008 17:56:10 [171:7378]: no tasker to notify
> > > > > > 09/19/2008 17:56:10 [171:7378]: exit states increased from 0 to 1
> > > > > > 09/19/2008 17:56:10 [171:7378]: failed starting prolog
> > > > > > 
> > > > > > Shepherd error:
> > > > > > 09/19/2008 17:56:10 [35140:7379]: can't stat()
> > > > > > 
> > > > > > 
> > > > > 
> > > >
> "/eliza13/starhf/aknospe/6ele/out/ep_624_st_physics_adc_6038085_raw_3060001_11BED037272D8747C7A9516B0A4C1D9D_11.out"
> > > > 
> > > > > 
> > > > > > as stdout_path: Value too large for defined data type
> KRB5CCNAME=none
> > > > > > uid=35140 gid=4002 4002 5008 5463 99999
> > > > > > Shepherd pe_hostfile:
> > > > > > pc2107.nersc.gov 1 all.q at pc2107.nersc.gov <NULL>
> > > > > > 
> > > > > > 
> > > > > > 
> > > > > > 
> > > > > 
> > > >
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