[GE users] submitting parallel jobs
reuti at staff.uni-marburg.de
Thu Dec 17 18:54:18 GMT 2009
Am 15.12.2009 um 12:24 schrieb cgull:
> Sorry to come back to this. But confused now with allocating memory
> to a queue.
> I know submit to these three queues with qsub -pe orte*
> Which is working well.
> The problem we have is that the job size allowable can be different
> for each of these machines.
> i.e. We know a job will only run on hill and bira, as job will take
> 40GB which we know is too large for cevert.
> We could do different orte_"machine" but i know we will have more
> machines in the future which will make this more complicated for
> the users submitting.
> Would be nice if we could set the limit of the queue for cevert to
> 35GB then if we submit with something like -l mem=40GB (or $# -l
> mem=40GB in script) SGE would automatically know that it cannot
> submit job onto cevert.
> If something like this was possible we could also assign hill and
> bira to have limits 45GB and 80GB respectively, therefore if we
> submitted a job with -l mem =75GB only bira would allow the job to
> run on it.
> I am confused with how i really should be setting this as there
> appear to be many different configurations. If you could shed any
> light on how it should be configured it would be appreciated.
> Thanks for your time in advance
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