[GE users] SDM 6.2U3 won't start

cbyun cbyun at ll.mit.edu
Wed Jul 1 14:28:21 BST 2009


Hi Richard,

I'm using exactly the same JVM:
# java -version
java version "1.6.0_13"
Java(TM) SE Runtime Environment (build 1.6.0_13-b03)
Java HotSpot(TM) 64-Bit Server VM (build 11.3-b02, mixed mode)


I'm running the CentOS 5.3 built by Rocks 5.2.

# cat /etc/*release
CentOS release 5.3 (Final)
Rocks release 5.2 (Chimichanga)
# uname -a
Linux llgriddev 2.6.18-128.1.6.el5 #1 SMP Wed Apr 1 09:10:25 EDT 2009 x86_64 x86_64 x86_64 GNU/Linux

However, majority of MBean policy was set correctly in my java.policy:

# grep MBean /var/spool/sdm/sdm62u3/security/java.policy
     permission javax.management.MBeanTrustPermission "register";
   permission javax.management.MBeanServerPermission "createMBeanServer";
   permission javax.management.MBeanTrustPermission "register";
   permission javax.management.MBeanPermission "*", "registerMBean";
   permission javax.management.MBeanPermission "*", "unregisterMBean";
   permission javax.management.MBeanPermission "*", "getDomains";
   permission javax.management.MBeanPermission "*", "getObjectInstance";
   permission javax.management.MBeanPermission "*", "queryMBeans";
   permission javax.management.MBeanPermission "*", "queryNames";
   permission javax.management.MBeanPermission "*", "getAttribute";
   permission javax.management.MBeanPermission "*", "getMBeanInfo";
   permission javax.management.MBeanPermission "*", "addNotificationListener";
   permission javax.management.MBeanPermission "*", "removeNotificationListener";
   permission javax.management.MBeanPermission "*", "isInstanceOf";
   permission javax.management.MBeanPermission "*", "getObjectInstance";
   permission javax.management.MBeanPermission "*", "invoke";
     /* permission javax.management.MBeanPermission "*", "runtime"; */
   permission javax.management.MBeanServerPermission "createMBeanServer";
   permission javax.management.MBeanTrustPermission "register";
   permission javax.management.MBeanPermission "*", "registerMBean";
   permission javax.management.MBeanPermission "*", "unregisterMBean";
   permission javax.management.MBeanPermission "*", "getDomains";
   permission javax.management.MBeanPermission "*", "getObjectInstance";
   permission javax.management.MBeanPermission "*", "queryMBeans";
   permission javax.management.MBeanPermission "*", "queryNames";
   permission javax.management.MBeanPermission "*", "getAttribute";
   permission javax.management.MBeanPermission "*", "getMBeanInfo";
   permission javax.management.MBeanPermission "*", "addNotificationListener";
   permission javax.management.MBeanPermission "*", "isInstanceOf";
   permission javax.management.MBeanPermission "*", "getObjectInstance";
   permission javax.management.MBeanPermission "*", "invoke";
   permission javax.management.MBeanPermission "com.sun.grid.grm.ui.ConfigurationService#run", "getMBeanInfo";
   permission javax.management.MBeanPermission "com.sun.grid.grm.ui.ConfigurationService#run", "invoke";
   permission javax.management.MBeanPermission "com.sun.grid.grm.ui.ConfigurationService#state", "getAttribute";

Even if I commented out the one line which  you recommended, cs_vm still doesn't start.

Any further suggestions?

Thanks,
- Chansup



> -----Original Message-----
> From: Richard.Hierlmeier at sun.com [mailto:Richard.Hierlmeier at sun.com]
> Sent: Wednesday, July 01, 2009 3:19 AM
> To: users at gridengine.sunsource.net
> Subject: Re: [GE users] SDM 6.2U3 won't start
>
> Hi Chansup,
>
> SDM uses its own java policy file. After the installation it is stored at
>
>    <local_spool_dir>/security/java.policy
>
> It seems that there is something wrong with this policy file. The action
> "runtime" for the javax.management.MBeanPermission does not exist.
>
> Please remove the following line from the java.policy file. You can
> comment it
> out with C-style comments:
>
> <    permission javax.management.MBeanPermission "*", "runtime";
>  > /* permission javax.management.MBeanPermission "*", "runtime"; */
>
> You can also remove/comment out this line in the
> <dist-dir>/util/templates/java.policy.template. This file is used as
> source for
> the java.policy file during the installation.
>
> The strange thing is that the problem does not occur in our environment.
> We
> tested it also with java6u13. On my opensolaris box I tested it with
> 1.6.0_13-b03:
>
> % java -version
> java version "1.6.0_13"
> Java(TM) SE Runtime Environment (build 1.6.0_13-b03)
> Java HotSpot(TM) Server VM (build 11.3-b02, mixed mode)
>
> What is the exact version of your jvm?
>
> Richard
>
>
> cbyun wrote:
> > I found the following err file on /tmp:
> >
> > # cat err.2730.44
> > java.security.policy: error adding Permission,
> javax.management.MBeanPermission:
> >         java.lang.IllegalArgumentException: Invalid permission: runtime
> >
> > This might be the cause of the start up failure.
> > Anyway, Below is the stack trace that I got:
> >
> > # /bin/sh -x /opt/sdm/bin/sdmadm -d -s sdm62u3 suj
> > + PATH=/bin:/usr/bin:/sbin:/usr/sbin
> > + CLASS=com.sun.grid.grm.cli.SdmAdm
> > ++ dirname /opt/sdm/bin/sdmadm
> > + BASEDIR=/opt/sdm/bin
> > ++ cd /opt/sdm/bin
> > ++ pwd
> > + BASEDIR=/opt/sdm/bin
> > ++ dirname /opt/sdm/bin
> > + SDM_DIST=/opt/sdm
> > + JVM_ARGS=
> > + for arg in '"$@"'
> > + '[' -d = -D ']'
> > + for arg in '"$@"'
> > + '[' -s = -D ']'
> > + for arg in '"$@"'
> > + '[' sdm62u3 = -D ']'
> > + for arg in '"$@"'
> > + '[' suj = -D ']'
> > + '[' /usr/java/default = '' ']'
> > + JAVA=/usr/java/default/bin/java
> > + '[' '!' '(' -x /usr/java/default/bin/java -a '!' -d
> /usr/java/default/bin/java ')' ']'
> > ++ /opt/sdm/util/arch
> > + ARCH=lx26-amd64
> > + export ARCH
> > + case $ARCH in
> > + ARCH=lx-amd64
> > + JVM_ARGS=' -Djava.library.path=/opt/sdm/lib/lx-amd64'
> > + JVM_ARGS=' -Djava.library.path=/opt/sdm/lib/lx-amd64 -
> Djava.endorsed.dirs=/opt/sdm/lib/ext/endorsed'
> > + JVM_ARGS=' -Djava.library.path=/opt/sdm/lib/lx-amd64 -
> Djava.endorsed.dirs=/opt/sdm/lib/ext/endorsed -
> Dcom.sun.grid.grm.management.connectionTimeout=20'
> > + /usr/java/default/bin/java -Djava.library.path=/opt/sdm/lib/lx-amd64 -
> Djava.endorsed.dirs=/opt/sdm/lib/ext/endorsed -
> Dcom.sun.grid.grm.management.connectionTimeout=20 -jar /opt/sdm/lib/sdm-
> starter.jar com.sun.grid.grm.cli.SdmAdm -d -s sdm62u3 suj
> > jvm         host            result message
> > -----------------------------------------------------------------
> > cs_vm       llgriddev.local ERROR  JVM: cs_vm died during
> >                                    startup.
> > com.sun.grid.grm.GrmException: JVM: cs_vm died during startup.
> >         at com.sun.grid.grm.bootstrap.ParentStartupService.start(Unknown
> Source)
> >         at com.sun.grid.grm.ui.component.StartJVMCommand.execute(Unknown
> Source)
> >         at com.sun.grid.grm.ui.impl.CommandServiceImpl.execute(Unknown
> Source)
> >         at
> com.sun.grid.grm.cli.cmd.components.StartJVMCliCommand.execute(Unknown
> Source)
> >         at com.sun.grid.grm.cli.AbstractCli.run(Unknown Source)
> >         at com.sun.grid.grm.cli.SdmAdm.main(Unknown Source)
> >         at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
> >         at
> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:
> 39)
> >         at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorIm
> pl.java:25)
> >         at java.lang.reflect.Method.invoke(Method.java:597)
> >         at com.sun.grid.grm.util.MainWrapper$SystemRunThread.run(Unknown
> Source)
> > executor_vm llgriddev.local ERROR  Timeout. Pid file:
> >                                    /var/spool/sdm/sdm62u3/run/exe
> >                                    cutor_vm at llgriddev.local for
> >                                    JVM: executor_vm not found.
> > com.sun.grid.grm.GrmException: Timeout. Pid file:
> /var/spool/sdm/sdm62u3/run/executor_vm at llgriddev.local for JVM:
> executor_vm not found.
> >         at com.sun.grid.grm.bootstrap.ParentStartupService.start(Unknown
> Source)
> >         at com.sun.grid.grm.ui.component.StartJVMCommand.execute(Unknown
> Source)
> >         at com.sun.grid.grm.ui.impl.CommandServiceImpl.execute(Unknown
> Source)
> >         at
> com.sun.grid.grm.cli.cmd.components.StartJVMCliCommand.execute(Unknown
> Source)
> >         at com.sun.grid.grm.cli.AbstractCli.run(Unknown Source)
> >         at com.sun.grid.grm.cli.SdmAdm.main(Unknown Source)
> >         at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
> >         at
> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:
> 39)
> >         at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorIm
> pl.java:25)
> >         at java.lang.reflect.Method.invoke(Method.java:597)
> >         at com.sun.grid.grm.util.MainWrapper$SystemRunThread.run(Unknown
> Source)
> > rp_vm       llgriddev.local ERROR  JVM: rp_vm died during
> >                                    startup.
> > com.sun.grid.grm.GrmException: JVM: rp_vm died during startup.
> >         at com.sun.grid.grm.bootstrap.ParentStartupService.start(Unknown
> Source)
> >         at com.sun.grid.grm.ui.component.StartJVMCommand.execute(Unknown
> Source)
> >         at com.sun.grid.grm.ui.impl.CommandServiceImpl.execute(Unknown
> Source)
> >         at
> com.sun.grid.grm.cli.cmd.components.StartJVMCliCommand.execute(Unknown
> Source)
> >         at com.sun.grid.grm.cli.AbstractCli.run(Unknown Source)
> >         at com.sun.grid.grm.cli.SdmAdm.main(Unknown Source)
> >         at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
> >         at
> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:
> 39)
> >         at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorIm
> pl.java:25)
> >         at java.lang.reflect.Method.invoke(Method.java:597)
> >         at com.sun.grid.grm.util.MainWrapper$SystemRunThread.run(Unknown
> Source)
> > Error: com.sun.grid.grm.GrmException: Command has generated error.
> >         at
> com.sun.grid.grm.cli.cmd.components.StartJVMCliCommand.execute(Unknown
> Source)
> >         at com.sun.grid.grm.cli.AbstractCli.run(Unknown Source)
> >         at com.sun.grid.grm.cli.SdmAdm.main(Unknown Source)
> >         at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
> >         at
> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:
> 39)
> >         at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorIm
> pl.java:25)
> >         at java.lang.reflect.Method.invoke(Method.java:597)
> >         at com.sun.grid.grm.util.MainWrapper$SystemRunThread.run(Unknown
> Source)
> > + exit 2
> >
> >
> > Also, I changed the logging level but I don't get cs_vm log.
> >
> > Here is what I have in the logging.properties:
> >
> > # Default global logging level.
> > # Loggers and Handlers may override this level
> > .level=FINE
> > javax.level=SEVERE
> >
> > com.sun.grid.grm.service.level=FINE
> >
> > # --- grid.grm logging level ---
> > com.sun.grid.grm.level=FINE
> >
> > # --- FileHandler ---
> > java.util.logging.FileHandler.level=ALL
> >
> java.util.logging.FileHandler.formatter=com.sun.grid.grm.util.GrmFormatter
> > java.util.logging.FileHandler.pattern=${log_dir}/${jvm_name}-%g.log
> > java.util.logging.FileHandler.append=true
> > <cure here>
> >
> > # find /var/spool/sdm/sdm62u3/log -ls
> > 4406418    4 drwxr-xr-x   2 sge      root         4096 Jun 30 11:24
> /var/spool/sdm/sdm62u3/log
> > 4406510    0 -rw-r--r--   1 root     root            0 Jun 30 11:09
> /var/spool/sdm/sdm62u3/log/executor_vm.stderr
> > 4406511    0 -rw-r--r--   1 root     root            0 Jun 30 11:09
> /var/spool/sdm/sdm62u3/log/executor_vm-0.log.lck
> > 4406516    4 -rw-r--r--   1 root     root          330 Jun 30 11:08
> /var/spool/sdm/sdm62u3/log/executor_vm-0.log.1
> > 4406515    0 -rw-r--r--   1 root     root            0 Jun 30 11:07
> /var/spool/sdm/sdm62u3/log/executor_vm-0.log.1.lck
> > 4406512   96 -rw-r--r--   1 root     root        90359 Jun 30 11:10
> /var/spool/sdm/sdm62u3/log/executor_vm-0.log
> > 4406505    0 -rw-r--r--   1 root     root            0 Jun 30 11:09
> /var/spool/sdm/sdm62u3/log/executor_vm.stdout
> >
> > There is not much valuable information in executor_vm-0.log. It is
> waiting for cs_vm and failed.
> >
> > Any further suggestions are welcome.
> >
> > Thanks,
> > - Chansup
> >
> >
> >
> >> -----Original Message-----
> >> From: Michal.Bachorik at sun.com [mailto:Michal.Bachorik at sun.com]
> >> Sent: Tuesday, June 30, 2009 10:06 AM
> >> To: users at gridengine.sunsource.net
> >> Cc: Byun, Chansup
> >> Subject: Re: [GE users] SDM 6.2U3 won't start
> >>
> >> also, you should increase the logging level (in
> >> <sdp_spool>/logging.properties).
> >>
> >> regards,
> >>
> >> m.
> >>
> >> easymf wrote:
> >>> chansup,
> >>>
> >>>
> >>> try to start it with "sdmadm -d -s sdm62u3 suj". it will print a
> >>> stacktrace .. and also, look at the log files in sdm spool dir.
> >>> as all of your jvms has "died" (refused to start), it seems to be a
> >>> problem with installation or configuration.
> >>>
> >>> regards,
> >>>
> >>> michal
> >>>
> >>> cbyun wrote:
> >>>
> >>>> Hi,
> >>>>
> >>>> I just installed SDM from SGE 6.2u3 release without any errors.
> >>>> Then, I tried to start JVMs but none of them started with the
> following
> >> error:
> >>>> # sdmadm -s sdm62u3 suj
> >>>> jvm         host            result message
> >>>> -----------------------------------------------------------------
> >>>> cs_vm       llgriddev.local ERROR  JVM: cs_vm died during
> >>>>                                    startup.
> >>>> executor_vm llgriddev.local ERROR  Timeout. Pid file:
> >>>>                                    /var/spool/sdm/sdm62u3/run/exe
> >>>>                                    cutor_vm at llgriddev.local for
> >>>>                                    JVM: executor_vm not found.
> >>>> rp_vm       llgriddev.local ERROR  JVM: rp_vm died during
> >>>>                                    startup.
> >>>> Error: Command has generated error.
> >>>>
> >>>> I used Java 1.6.
> >>>>
> >>>> # echo $JAVA_HOME
> >>>> /usr/java/latest
> >>>>
> >>>> # /usr/java/latest/bin/java -version
> >>>> java version "1.6.0_13"
> >>>> Java(TM) SE Runtime Environment (build 1.6.0_13-b03)
> >>>> Java HotSpot(TM) 64-Bit Server VM (build 11.3-b02, mixed mode)
> >>>>
> >>>> Any suggestions for further troubleshooting?
> >>>>
> >>>> Thanks,
> >>>> - Chansup
> >>>>
> >>>> ------------------------------------------------------
> >>>>
> >>
> http://gridengine.sunsource.net/ds/viewMessage.do?dsForumId=38&dsMessageId
> >> =204401
> >>>> To unsubscribe from this discussion, e-mail: [users-
> >> unsubscribe at gridengine.sunsource.net].
> >>>>
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> >> =204552
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> >
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>
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> -
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> Software Engineering         Fax:   ++49 (0)941 3075-222
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