[GE users] how to get finished/failed/running/waiting jobs in an array job?

pescobar pescobar at cipf.es
Fri Jul 3 15:22:47 BST 2009


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Hi,

I have been playing around with "qstat -g d" also "qstat -qs {a|c|d|o|s|u|A|C|D|E|S}" and 
"qstats -s {p|r|s|z|hu|ho|hs|hd|hj|ha|h|a}[+]" and combining this three options with no 
luck :(

With this options it seems I could parse the number of running jobs ( r state ) and also 
the number or waiting jobs (qw state) but still couldn?t find how to get "total jobs" in 
my array job, number finished jobs and number of jobs wich finished with error.

when I run "qstat -g d -s z" to get finished job I just get ids of array jobs, but not how 
many jobs are "inside" my array job. as example:

emidio at mem11:/home/jordi$ qstat -g d -s z
job-ID  prior   name       user         state submit/start at     queue                          
slots ja-task-ID
-----------------------------------------------------------------------------------------------------------------
    279 0.00000 all.txt.ru emidio       qw    06/23/2009 16:45:12                                    
1 1-10:1
    324 0.00000 disc.txt.r emidio       qw    06/30/2009 11:12:36                                    
1 1
    317 0.55500 br4.run    emidio       qw    06/29/2009 12:22:20                                    
1 56
 
?does anyone knows how to get this info from qstat output???? I have tried many diferent 
combinations on the qstat options with no luck.

thanks in advance.
Pablo.




On Friday 03 July 2009 14:07:13 fy wrote:
> Can you make use of "qstat -g d"? Or, even "qstat -g d -xml"?



-- 
Pablo Escobar Lopez
Head of Infrastructure & IT Support
Bioinformatics Department
Centro de Investigación Príncipe Felipe (CIPF)
http://bioinfo.cipf.es

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