[GE users] core duo systems not accepting jobs

flengyel flengyel at gc.cuny.edu
Sun Jul 12 23:12:21 BST 2009


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On Sun, Jul 12, 2009 at 5:50 PM, craffi <dag at sonsorol.org<mailto:dag at sonsorol.org>> wrote:
SGE version would have nothing to do with what you are seeing.

What does "qstat -f" say about those nodes? Are they in error state or
some other state?

They don't appear to be in a pending state. all.q is not used but x86_64.q
and quad.q blow are used.

The number of slots should be set to the number of cores.
m01-m20 are quads and should be configured so that the slots is 4;
and on m31-m60 the number of slots should be 2.

The number of slots is set correctly on a host basis.

[root at nept nept]# qstat -f
queuename                      qtype used/tot. load_avg arch          states
----------------------------------------------------------------------------
all.q at gccg.gc.cuny.edu<mailto:all.q at gccg.gc.cuny.edu>         BIP   0/4       0.18     lx24-amd64
----------------------------------------------------------------------------
all.q at m01.gc.cuny.edu<mailto:all.q at m01.gc.cuny.edu>          BIP   0/1       4.02     lx24-amd64
----------------------------------------------------------------------------
all.q at m02.gc.cuny.edu<mailto:all.q at m02.gc.cuny.edu>          BIP   0/1       4.03     lx24-amd64
----------------------------------------------------------------------------
all.q at m03.gc.cuny.edu<mailto:all.q at m03.gc.cuny.edu>          BIP   0/1       3.16     lx24-amd64
----------------------------------------------------------------------------
all.q at m04.gc.cuny.edu<mailto:all.q at m04.gc.cuny.edu>          BIP   0/4       4.00     lx24-amd64
----------------------------------------------------------------------------
all.q at m05.gc.cuny.edu<mailto:all.q at m05.gc.cuny.edu>          BIP   0/1       3.92     lx24-amd64
----------------------------------------------------------------------------
all.q at m06.gc.cuny.edu<mailto:all.q at m06.gc.cuny.edu>          BIP   0/4       4.03     lx24-amd64
----------------------------------------------------------------------------
all.q at m07.gc.cuny.edu<mailto:all.q at m07.gc.cuny.edu>          BIP   0/1       4.02     lx24-amd64
----------------------------------------------------------------------------
all.q at m08.gc.cuny.edu<mailto:all.q at m08.gc.cuny.edu>          BIP   0/1       -NA-     lx24-amd64    au
----------------------------------------------------------------------------
all.q at m09.gc.cuny.edu<mailto:all.q at m09.gc.cuny.edu>          BIP   0/1       4.02     lx24-amd64
----------------------------------------------------------------------------
all.q at m10.gc.cuny.edu<mailto:all.q at m10.gc.cuny.edu>          BIP   0/1       8.02     lx24-amd64
----------------------------------------------------------------------------
all.q at m11.gc.cuny.edu<mailto:all.q at m11.gc.cuny.edu>          BIP   0/1       0.00     lx24-amd64
----------------------------------------------------------------------------
all.q at m12.gc.cuny.edu<mailto:all.q at m12.gc.cuny.edu>          BIP   0/4       4.00     lx24-amd64
----------------------------------------------------------------------------
all.q at m13.gc.cuny.edu<mailto:all.q at m13.gc.cuny.edu>          BIP   0/4       4.01     lx24-amd64
----------------------------------------------------------------------------
all.q at m14.gc.cuny.edu<mailto:all.q at m14.gc.cuny.edu>          BIP   0/4       4.00     lx24-amd64
----------------------------------------------------------------------------
all.q at m15.gc.cuny.edu<mailto:all.q at m15.gc.cuny.edu>          BIP   0/4       4.00     lx24-amd64
----------------------------------------------------------------------------
all.q at m16.gc.cuny.edu<mailto:all.q at m16.gc.cuny.edu>          BIP   0/1       3.97     lx24-amd64
----------------------------------------------------------------------------
all.q at m17.gc.cuny.edu<mailto:all.q at m17.gc.cuny.edu>          BIP   0/4       4.02     lx24-amd64
----------------------------------------------------------------------------
all.q at m18.gc.cuny.edu<mailto:all.q at m18.gc.cuny.edu>          BIP   0/1       4.02     lx24-amd64
----------------------------------------------------------------------------
all.q at m19.gc.cuny.edu<mailto:all.q at m19.gc.cuny.edu>          BIP   0/4       4.01     lx24-amd64
----------------------------------------------------------------------------
all.q at m20.gc.cuny.edu<mailto:all.q at m20.gc.cuny.edu>          BIP   0/1       4.00     lx24-amd64
----------------------------------------------------------------------------
all.q at m31.gc.cuny.edu<mailto:all.q at m31.gc.cuny.edu>          BIP   0/1       4.00     lx24-amd64
----------------------------------------------------------------------------
all.q at m32.gc.cuny.edu<mailto:all.q at m32.gc.cuny.edu>          BIP   0/1       0.00     lx24-amd64
----------------------------------------------------------------------------
all.q at m33.gc.cuny.edu<mailto:all.q at m33.gc.cuny.edu>          BIP   0/1       0.00     lx24-amd64
----------------------------------------------------------------------------
all.q at m34.gc.cuny.edu<mailto:all.q at m34.gc.cuny.edu>          BIP   0/1       0.00     lx24-amd64
----------------------------------------------------------------------------
all.q at m35.gc.cuny.edu<mailto:all.q at m35.gc.cuny.edu>          BIP   0/1       0.00     lx24-amd64
----------------------------------------------------------------------------
all.q at m36.gc.cuny.edu<mailto:all.q at m36.gc.cuny.edu>          BIP   0/1       1.02     lx24-amd64
----------------------------------------------------------------------------
all.q at m37.gc.cuny.edu<mailto:all.q at m37.gc.cuny.edu>          BIP   0/1       0.00     lx24-amd64
----------------------------------------------------------------------------
all.q at m38.gc.cuny.edu<mailto:all.q at m38.gc.cuny.edu>          BIP   0/1       0.00     lx24-amd64
----------------------------------------------------------------------------
all.q at m39.gc.cuny.edu<mailto:all.q at m39.gc.cuny.edu>          BIP   0/1       0.00     lx24-amd64
----------------------------------------------------------------------------
all.q at m40.gc.cuny.edu<mailto:all.q at m40.gc.cuny.edu>          BIP   0/1       0.00     lx24-amd64
----------------------------------------------------------------------------
all.q at m41.gc.cuny.edu<mailto:all.q at m41.gc.cuny.edu>          BIP   0/1       0.00     lx24-amd64
----------------------------------------------------------------------------
all.q at m42.gc.cuny.edu<mailto:all.q at m42.gc.cuny.edu>          BIP   0/1       0.00     lx24-amd64
----------------------------------------------------------------------------
all.q at m43.gc.cuny.edu<mailto:all.q at m43.gc.cuny.edu>          BIP   0/1       0.00     lx24-amd64
----------------------------------------------------------------------------
all.q at m44.gc.cuny.edu<mailto:all.q at m44.gc.cuny.edu>          BIP   0/1       0.00     lx24-amd64
----------------------------------------------------------------------------
all.q at m45.gc.cuny.edu<mailto:all.q at m45.gc.cuny.edu>          BIP   0/1       0.00     lx24-amd64
----------------------------------------------------------------------------
all.q at m46.gc.cuny.edu<mailto:all.q at m46.gc.cuny.edu>          BIP   0/1       0.00     lx24-amd64
----------------------------------------------------------------------------
all.q at m47.gc.cuny.edu<mailto:all.q at m47.gc.cuny.edu>          BIP   0/1       1231.84  lx24-amd64    a
----------------------------------------------------------------------------
all.q at m48.gc.cuny.edu<mailto:all.q at m48.gc.cuny.edu>          BIP   0/2       0.00     lx24-amd64
----------------------------------------------------------------------------
all.q at m49.gc.cuny.edu<mailto:all.q at m49.gc.cuny.edu>          BIP   0/1       4.02     lx24-amd64
----------------------------------------------------------------------------
all.q at m50.gc.cuny.edu<mailto:all.q at m50.gc.cuny.edu>          BIP   0/1       0.02     lx24-amd64
----------------------------------------------------------------------------
all.q at m51.gc.cuny.edu<mailto:all.q at m51.gc.cuny.edu>          BIP   0/1       0.00     lx24-amd64
----------------------------------------------------------------------------
all.q at m52.gc.cuny.edu<mailto:all.q at m52.gc.cuny.edu>          BIP   0/1       0.00     lx24-amd64
----------------------------------------------------------------------------
all.q at m53.gc.cuny.edu<mailto:all.q at m53.gc.cuny.edu>          BIP   0/1       0.00     lx24-amd64
----------------------------------------------------------------------------
all.q at m54.gc.cuny.edu<mailto:all.q at m54.gc.cuny.edu>          BIP   0/1       0.00     lx24-amd64
----------------------------------------------------------------------------
all.q at m55.gc.cuny.edu<mailto:all.q at m55.gc.cuny.edu>          BIP   0/1       0.00     lx24-amd64
----------------------------------------------------------------------------
all.q at m56.gc.cuny.edu<mailto:all.q at m56.gc.cuny.edu>          BIP   0/1       0.00     lx24-amd64
----------------------------------------------------------------------------
all.q at m57.gc.cuny.edu<mailto:all.q at m57.gc.cuny.edu>          BIP   0/1       0.00     lx24-amd64
----------------------------------------------------------------------------
all.q at m58.gc.cuny.edu<mailto:all.q at m58.gc.cuny.edu>          BIP   0/1       0.00     lx24-amd64
----------------------------------------------------------------------------
all.q at m59.gc.cuny.edu<mailto:all.q at m59.gc.cuny.edu>          BIP   0/1       0.00     lx24-amd64
----------------------------------------------------------------------------
all.q at m60.gc.cuny.edu<mailto:all.q at m60.gc.cuny.edu>          BIP   0/1       0.00     lx24-amd64
----------------------------------------------------------------------------
all.q at m61.gc.cuny.edu<mailto:all.q at m61.gc.cuny.edu>          BIP   0/1       -NA-     lx24-x86      au
----------------------------------------------------------------------------
all.q at m62.gc.cuny.edu<mailto:all.q at m62.gc.cuny.edu>          BIP   0/1       -NA-     lx24-x86      au
----------------------------------------------------------------------------
all.q at m63.gc.cuny.edu<mailto:all.q at m63.gc.cuny.edu>          BIP   0/1       -NA-     lx24-x86      au
----------------------------------------------------------------------------
all.q at m64.gc.cuny.edu<mailto:all.q at m64.gc.cuny.edu>          BIP   0/1       -NA-     lx24-x86      au
----------------------------------------------------------------------------
all.q at m65.gc.cuny.edu<mailto:all.q at m65.gc.cuny.edu>          BIP   0/1       -NA-     lx24-x86      au
----------------------------------------------------------------------------
all.q at m66.gc.cuny.edu<mailto:all.q at m66.gc.cuny.edu>          BIP   0/1       -NA-     lx24-x86      au
----------------------------------------------------------------------------
all.q at m67.gc.cuny.edu<mailto:all.q at m67.gc.cuny.edu>          BIP   0/1       -NA-     lx24-x86      au
----------------------------------------------------------------------------
all.q at m68.gc.cuny.edu<mailto:all.q at m68.gc.cuny.edu>          BIP   0/1       15.47    lx24-x86      a
----------------------------------------------------------------------------
all.q at m69.gc.cuny.edu<mailto:all.q at m69.gc.cuny.edu>          BIP   0/1       -NA-     lx24-x86      au
----------------------------------------------------------------------------
instructional.q at m61.gc.cuny.ed BIP   0/1       -NA-     lx24-x86      au
----------------------------------------------------------------------------
instructional.q at m62.gc.cuny.ed BIP   0/1       -NA-     lx24-x86      au
----------------------------------------------------------------------------
instructional.q at m63.gc.cuny.ed BIP   0/1       -NA-     lx24-x86      au
----------------------------------------------------------------------------
instructional.q at m64.gc.cuny.ed BIP   0/1       -NA-     lx24-x86      au
----------------------------------------------------------------------------
instructional.q at m65.gc.cuny.ed BIP   0/1       -NA-     lx24-x86      au
----------------------------------------------------------------------------
instructional.q at m66.gc.cuny.ed BIP   0/1       -NA-     lx24-x86      au
----------------------------------------------------------------------------
instructional.q at m67.gc.cuny.ed BIP   0/1       -NA-     lx24-x86      au
----------------------------------------------------------------------------
instructional.q at m68.gc.cuny.ed BIP   0/1       15.47    lx24-x86      a
----------------------------------------------------------------------------
instructional.q at m69.gc.cuny.ed BIP   0/1       -NA-     lx24-x86      au
----------------------------------------------------------------------------
lp.q at m01.gc.cuny.edu<mailto:lp.q at m01.gc.cuny.edu>           BIP   0/4       4.02     lx24-amd64
----------------------------------------------------------------------------
lp.q at m14.gc.cuny.edu<mailto:lp.q at m14.gc.cuny.edu>           BIP   0/4       4.00     lx24-amd64
----------------------------------------------------------------------------
quad.q at m01.gc.cuny.edu<mailto:quad.q at m01.gc.cuny.edu>         BIP   4/4       4.02     lx24-amd64
  23483 0.25021 Si2TS      agreer       r     07/12/2009 15:45:01     4
----------------------------------------------------------------------------
quad.q at m02.gc.cuny.edu<mailto:quad.q at m02.gc.cuny.edu>         BIP   4/4       4.03     lx24-amd64
  23489 0.25019 Si201a     agreer       r     07/12/2009 15:54:11     4
----------------------------------------------------------------------------
quad.q at m03.gc.cuny.edu<mailto:quad.q at m03.gc.cuny.edu>         BIP   4/4       3.16     lx24-amd64
  23449 0.25513 armch1010A agreer       r     07/11/2009 09:34:40     1
  23505 0.25000 BZDBFTS01. agreer       r     07/12/2009 17:02:51     2
  23506 0.25000 BZDBFTS02. agreer       r     07/12/2009 17:02:51     1
----------------------------------------------------------------------------
quad.q at m04.gc.cuny.edu<mailto:quad.q at m04.gc.cuny.edu>         BIP   4/4       4.00     lx24-amd64
  23487 0.25020 Si203      agreer       r     07/12/2009 15:50:11     4
----------------------------------------------------------------------------
quad.q at m05.gc.cuny.edu<mailto:quad.q at m05.gc.cuny.edu>         BIP   4/4       3.92     lx24-amd64
  23432 0.25813 K-14-S-B3- mgreen       r     07/10/2009 19:52:20     4
----------------------------------------------------------------------------
quad.q at m06.gc.cuny.edu<mailto:quad.q at m06.gc.cuny.edu>         BIP   4/4       4.03     lx24-amd64
  22532 0.32092 w84ne-onnn nkobko       r     06/28/2009 00:29:27     3
  23493 0.25018 Si201c     agreer       r     07/12/2009 15:57:51     1
----------------------------------------------------------------------------
quad.q at m07.gc.cuny.edu<mailto:quad.q at m07.gc.cuny.edu>         BIP   4/4       4.02     lx24-amd64
  23449 0.25513 armch1010A agreer       r     07/11/2009 09:34:40     1
  23491 0.25018 Si201b     agreer       r     07/12/2009 15:56:31     3
----------------------------------------------------------------------------
quad.q at m08.gc.cuny.edu<mailto:quad.q at m08.gc.cuny.edu>         BIP   0/4       -NA-     lx24-amd64    au
----------------------------------------------------------------------------
quad.q at m09.gc.cuny.edu<mailto:quad.q at m09.gc.cuny.edu>         BIP   4/4       4.02     lx24-amd64
  23436 0.25806 Na-10-S-B3 mgreen       r     07/10/2009 23:56:20     1
  23473 0.25365 trimer6.re<http://trimer6.re> jschulman    r     07/12/2009 01:25:30     3
----------------------------------------------------------------------------
quad.q at m10.gc.cuny.edu<mailto:quad.q at m10.gc.cuny.edu>         BIP   4/4       8.02     lx24-amd64
  23436 0.25806 Na-10-S-B3 mgreen       r     07/10/2009 23:56:20     2
  23507 0.25000 BZDBFTS03. agreer       r     07/12/2009 17:02:51     2
----------------------------------------------------------------------------
quad.q at m11.gc.cuny.edu<mailto:quad.q at m11.gc.cuny.edu>         BIP   4/4       0.00     lx24-amd64
  23436 0.25806 Na-10-S-B3 mgreen       r     07/10/2009 23:56:20     1
  23493 0.25018 Si201c     agreer       r     07/12/2009 15:57:51     2
  23505 0.25000 BZDBFTS01. agreer       r     07/12/2009 17:02:51     1
----------------------------------------------------------------------------
quad.q at m12.gc.cuny.edu<mailto:quad.q at m12.gc.cuny.edu>         BIP   4/4       4.00     lx24-amd64
  19225 0.68349 P-Gly-D31. itsai        r     03/25/2009 00:50:04     4
----------------------------------------------------------------------------
quad.q at m13.gc.cuny.edu<mailto:quad.q at m13.gc.cuny.edu>         BIP   4/4       4.01     lx24-amd64
  23449 0.25513 armch1010A agreer       r     07/11/2009 09:34:40     2
  23473 0.25365 trimer6.re<http://trimer6.re> jschulman    r     07/12/2009 01:25:30     1
  23507 0.25000 BZDBFTS03. agreer       r     07/12/2009 17:02:51     1
----------------------------------------------------------------------------
quad.q at m14.gc.cuny.edu<mailto:quad.q at m14.gc.cuny.edu>         BIP   4/4       4.00     lx24-amd64
  22531 0.32100 w84-kr-o-c nkobko       r     06/25/2009 09:59:57     4
----------------------------------------------------------------------------
quad.q at m15.gc.cuny.edu<mailto:quad.q at m15.gc.cuny.edu>         BIP   4/4       4.00     lx24-amd64
  20806 0.39568 P-Gly-Z.co itsai        r     06/10/2009 19:21:46     1
  23491 0.25018 Si201b     agreer       r     07/12/2009 15:56:31     1
  23505 0.25000 BZDBFTS01. agreer       r     07/12/2009 17:02:51     1
  23508 0.25000 BZDBFTS04. agreer       r     07/12/2009 17:38:41     1
----------------------------------------------------------------------------
quad.q at m16.gc.cuny.edu<mailto:quad.q at m16.gc.cuny.edu>         BIP   4/4       3.97     lx24-amd64
  23493 0.25018 Si201c     agreer       r     07/12/2009 15:57:51     1
  23508 0.25000 BZDBFTS04. agreer       r     07/12/2009 17:38:41     3
----------------------------------------------------------------------------
quad.q at m17.gc.cuny.edu<mailto:quad.q at m17.gc.cuny.edu>         BIP   4/4       4.02     lx24-amd64
  20126 0.47822 w84-ar-Onn nkobko       r     05/15/2009 09:13:15     4
----------------------------------------------------------------------------
quad.q at m18.gc.cuny.edu<mailto:quad.q at m18.gc.cuny.edu>         BIP   4/4       4.02     lx24-amd64
  22532 0.32092 w84ne-onnn nkobko       r     06/28/2009 00:29:27     1
  23506 0.25000 BZDBFTS02. agreer       r     07/12/2009 17:02:51     2
  23507 0.25000 BZDBFTS03. agreer       r     07/12/2009 17:02:51     1
----------------------------------------------------------------------------
quad.q at m19.gc.cuny.edu<mailto:quad.q at m19.gc.cuny.edu>         BIP   4/4       4.01     lx24-amd64
  20806 0.39568 P-Gly-Z.co itsai        r     06/10/2009 19:21:46     3
  23506 0.25000 BZDBFTS02. agreer       r     07/12/2009 17:02:51     1
----------------------------------------------------------------------------
quad.q at m20.gc.cuny.edu<mailto:quad.q at m20.gc.cuny.edu>         BIP   4/4       4.00     lx24-amd64
  23431 0.25813 Na-14-S-B3 mgreen       r     07/10/2009 19:44:20     4
----------------------------------------------------------------------------
test.q at m62.gc.cuny.edu<mailto:test.q at m62.gc.cuny.edu>         BIP   0/1       -NA-     lx24-x86      au
----------------------------------------------------------------------------
x86_64.q at m31.gc.cuny.edu<mailto:x86_64.q at m31.gc.cuny.edu>       BIP   2/2       4.00     lx24-amd64
  18481 0.75000 trimer.res jschulman    r     03/06/2009 19:09:12     2
----------------------------------------------------------------------------
x86_64.q at m32.gc.cuny.edu<mailto:x86_64.q at m32.gc.cuny.edu>       BIP   0/2       0.00     lx24-amd64
----------------------------------------------------------------------------
x86_64.q at m33.gc.cuny.edu<mailto:x86_64.q at m33.gc.cuny.edu>       BIP   0/2       0.00     lx24-amd64
----------------------------------------------------------------------------
x86_64.q at m34.gc.cuny.edu<mailto:x86_64.q at m34.gc.cuny.edu>       BIP   0/2       0.00     lx24-amd64
----------------------------------------------------------------------------
x86_64.q at m35.gc.cuny.edu<mailto:x86_64.q at m35.gc.cuny.edu>       BIP   0/2       0.00     lx24-amd64
----------------------------------------------------------------------------
x86_64.q at m36.gc.cuny.edu<mailto:x86_64.q at m36.gc.cuny.edu>       BIP   0/2       1.02     lx24-amd64
----------------------------------------------------------------------------
x86_64.q at m37.gc.cuny.edu<mailto:x86_64.q at m37.gc.cuny.edu>       BIP   0/2       0.00     lx24-amd64
----------------------------------------------------------------------------
x86_64.q at m38.gc.cuny.edu<mailto:x86_64.q at m38.gc.cuny.edu>       BIP   0/2       0.00     lx24-amd64
----------------------------------------------------------------------------
x86_64.q at m39.gc.cuny.edu<mailto:x86_64.q at m39.gc.cuny.edu>       BIP   0/2       0.00     lx24-amd64
----------------------------------------------------------------------------
x86_64.q at m40.gc.cuny.edu<mailto:x86_64.q at m40.gc.cuny.edu>       BIP   0/2       0.00     lx24-amd64
----------------------------------------------------------------------------
x86_64.q at m41.gc.cuny.edu<mailto:x86_64.q at m41.gc.cuny.edu>       BIP   0/2       0.00     lx24-amd64
----------------------------------------------------------------------------
x86_64.q at m42.gc.cuny.edu<mailto:x86_64.q at m42.gc.cuny.edu>       BIP   0/2       0.00     lx24-amd64
----------------------------------------------------------------------------
x86_64.q at m43.gc.cuny.edu<mailto:x86_64.q at m43.gc.cuny.edu>       BIP   0/2       0.00     lx24-amd64
----------------------------------------------------------------------------
x86_64.q at m44.gc.cuny.edu<mailto:x86_64.q at m44.gc.cuny.edu>       BIP   0/2       0.00     lx24-amd64
----------------------------------------------------------------------------
x86_64.q at m45.gc.cuny.edu<mailto:x86_64.q at m45.gc.cuny.edu>       BIP   0/2       0.00     lx24-amd64
----------------------------------------------------------------------------
x86_64.q at m46.gc.cuny.edu<mailto:x86_64.q at m46.gc.cuny.edu>       BIP   0/2       0.00     lx24-amd64
----------------------------------------------------------------------------
x86_64.q at m47.gc.cuny.edu<mailto:x86_64.q at m47.gc.cuny.edu>       BIP   0/2       1231.84  lx24-amd64    a
----------------------------------------------------------------------------
x86_64.q at m48.gc.cuny.edu<mailto:x86_64.q at m48.gc.cuny.edu>       BIP   0/2       0.00     lx24-amd64
----------------------------------------------------------------------------
x86_64.q at m49.gc.cuny.edu<mailto:x86_64.q at m49.gc.cuny.edu>       BIP   2/2       4.02     lx24-amd64
  23275 0.26681 trimer5.re<http://trimer5.re> jschulman    r     07/08/2009 07:57:20     2
----------------------------------------------------------------------------
x86_64.q at m50.gc.cuny.edu<mailto:x86_64.q at m50.gc.cuny.edu>       BIP   0/2       0.02     lx24-amd64
----------------------------------------------------------------------------
x86_64.q at m51.gc.cuny.edu<mailto:x86_64.q at m51.gc.cuny.edu>       BIP   0/2       0.00     lx24-amd64
----------------------------------------------------------------------------
x86_64.q at m52.gc.cuny.edu<mailto:x86_64.q at m52.gc.cuny.edu>       BIP   0/2       0.00     lx24-amd64
----------------------------------------------------------------------------
x86_64.q at m53.gc.cuny.edu<mailto:x86_64.q at m53.gc.cuny.edu>       BIP   0/2       0.00     lx24-amd64
----------------------------------------------------------------------------
x86_64.q at m54.gc.cuny.edu<mailto:x86_64.q at m54.gc.cuny.edu>       BIP   0/2       0.00     lx24-amd64
----------------------------------------------------------------------------
x86_64.q at m55.gc.cuny.edu<mailto:x86_64.q at m55.gc.cuny.edu>       BIP   0/2       0.00     lx24-amd64
----------------------------------------------------------------------------
x86_64.q at m56.gc.cuny.edu<mailto:x86_64.q at m56.gc.cuny.edu>       BIP   0/2       0.00     lx24-amd64
----------------------------------------------------------------------------
x86_64.q at m57.gc.cuny.edu<mailto:x86_64.q at m57.gc.cuny.edu>       BIP   0/2       0.00     lx24-amd64
----------------------------------------------------------------------------
x86_64.q at m58.gc.cuny.edu<mailto:x86_64.q at m58.gc.cuny.edu>       BIP   0/2       0.00     lx24-amd64
----------------------------------------------------------------------------
x86_64.q at m59.gc.cuny.edu<mailto:x86_64.q at m59.gc.cuny.edu>       BIP   0/2       0.00     lx24-amd64
----------------------------------------------------------------------------
x86_64.q at m60.gc.cuny.edu<mailto:x86_64.q at m60.gc.cuny.edu>       BIP   0/2       0.00     lx24-amd64

############################################################################
 - PENDING JOBS - PENDING JOBS - PENDING JOBS - PENDING JOBS - PENDING JOBS
############################################################################
  23328 0.26196 test.com<http://test.com>   mmarianski   qw    07/09/2009 13:40:36     2
  23459 0.25425 NH3-s-b.co olavinda     qw    07/11/2009 12:58:47     2
  23460 0.25424 OMes_s-IRC olavinda     qw    07/11/2009 13:03:25     2
  23462 0.25423 OMes_s-IRC olavinda     qw    07/11/2009 13:04:48     2
  23463 0.25422 OMea_s-IRC olavinda     qw    07/11/2009 13:11:11     2
  23464 0.25421 OMea_s-IRC olavinda     qw    07/11/2009 13:12:49     2
  23469 0.25366 tr-COOH-fr egreer       qw    07/11/2009 16:37:03     2
  23470 0.25365 tr-MeOss-I egreer       qw    07/11/2009 16:38:45     2
  23471 0.25365 tr-COOHae- egreer       qw    07/11/2009 16:39:57     2
  23472 0.25365 tr-COOHae- egreer       qw    07/11/2009 16:40:49     2
  23510 0.00000 bzdbf01.co<http://bzdbf01.co> agreer       qw    07/12/2009 17:02:57     4
  23511 0.00000 bzdbf02.co<http://bzdbf02.co> agreer       qw    07/12/2009 17:02:57     4
  23512 0.00000 bzdbf03.co<http://bzdbf03.co> agreer       qw    07/12/2009 17:02:57     4
  23513 0.00000 bzdbf04.co<http://bzdbf04.co> agreer       qw    07/12/2009 17:02:57     4
  23514 0.00000 bzDBFO102. agreer       qw    07/12/2009 17:02:57     4
  23515 0.00000 bzDBFO202. agreer       qw    07/12/2009 17:02:58     4
  23516 0.00000 bzDBFO203. agreer       qw    07/12/2009 17:02:58     4
  23517 0.00000 bzDBFO204. agreer       qw    07/12/2009 17:02:58     4
For pending jobs what does "qstat -j <jobID>" tell you about why they
are still pending?

Let's take 23459 since this is representative

[root at nept nept]# qstat -j 23459
==============================================================
job_number:                 23459
exec_file:                  job_scripts/23459
submission_time:            Sat Jul 11 12:58:47 2009
owner:                      olavinda
uid:                        5096
group:                      domusers
gid:                        1000
sge_o_home:                 /home/nept/olavinda
sge_o_log_name:             olavinda
sge_o_path:                 /usr/lib64/qt-3.3/bin:/usr/kerberos/bin:/usr/lib/jvm/jdk1.6.0_05/bin:/home/nept/apps64/bin:/home/nept/apps64/ocaml/bin:/home/nept/apps64/emergent/bin:/usr/local/Trolltech/Qt-4.4.3/bin:/home/nept/apps64/R/bin:/home/nept/apps64/pgi/linux86-64/7.2/bin:/usr/lib/jvm/jdk1.6.0_12/bin:/home/nept/apps64/openmpi/bin:/usr/lib/jvm/jdk1.6.0_05/bin:/usr/local/sge/bin/lx24-amd64:/usr/local/bin:/bin:/usr/bin:/home/nept/apps64/postgres/bin:/home/nept/olavinda/bin
sge_o_shell:                /bin/bash
sge_o_workdir:              /home/nept/olavinda
sge_o_host:                 nept
account:                    sge
cwd:                        /home/nept/olavinda
path_aliases:               /tmp_mnt/ * * /
mail_list:                  olavinda at nept.gc.cuny.edu<mailto:olavinda at nept.gc.cuny.edu>
notify:                     FALSE
job_name:                   NH3-s-b.com
jobshare:                   0
hard_queue_list:            x86_64.q
shell_list:                 /bin/bash
env_list:
script_file:                STDIN
parallel environment:  gauss range: 2
scheduling info:            queue instance "all.q at m08.gc.cuny.edu<mailto:all.q at m08.gc.cuny.edu>" dropped because it is temporarily not available
                            queue instance "all.q at m61.gc.cuny.edu<mailto:all.q at m61.gc.cuny.edu>" dropped because it is temporarily not available
                            queue instance "all.q at m62.gc.cuny.edu<mailto:all.q at m62.gc.cuny.edu>" dropped because it is temporarily not available
                            queue instance "all.q at m63.gc.cuny.edu<mailto:all.q at m63.gc.cuny.edu>" dropped because it is temporarily not available
                            queue instance "all.q at m64.gc.cuny.edu<mailto:all.q at m64.gc.cuny.edu>" dropped because it is temporarily not available
                            queue instance "all.q at m65.gc.cuny.edu<mailto:all.q at m65.gc.cuny.edu>" dropped because it is temporarily not available
                            queue instance "all.q at m66.gc.cuny.edu<mailto:all.q at m66.gc.cuny.edu>" dropped because it is temporarily not available
                            queue instance "all.q at m67.gc.cuny.edu<mailto:all.q at m67.gc.cuny.edu>" dropped because it is temporarily not available
                            queue instance "all.q at m69.gc.cuny.edu<mailto:all.q at m69.gc.cuny.edu>" dropped because it is temporarily not available
                            queue instance "instructional.q at m62.gc.cuny.edu<mailto:instructional.q at m62.gc.cuny.edu>" dropped because it is temporarily not available
                            queue instance "instructional.q at m61.gc.cuny.edu<mailto:instructional.q at m61.gc.cuny.edu>" dropped because it is temporarily not available
                            queue instance "instructional.q at m66.gc.cuny.edu<mailto:instructional.q at m66.gc.cuny.edu>" dropped because it is temporarily not available
                            queue instance "instructional.q at m63.gc.cuny.edu<mailto:instructional.q at m63.gc.cuny.edu>" dropped because it is temporarily not available
                            queue instance "instructional.q at m64.gc.cuny.edu<mailto:instructional.q at m64.gc.cuny.edu>" dropped because it is temporarily not available
                            queue instance "instructional.q at m65.gc.cuny.edu<mailto:instructional.q at m65.gc.cuny.edu>" dropped because it is temporarily not available
                            queue instance "instructional.q at m67.gc.cuny.edu<mailto:instructional.q at m67.gc.cuny.edu>" dropped because it is temporarily not available
                            queue instance "instructional.q at m69.gc.cuny.edu<mailto:instructional.q at m69.gc.cuny.edu>" dropped because it is temporarily not available
                            queue instance "test.q at m62.gc.cuny.edu<mailto:test.q at m62.gc.cuny.edu>" dropped because it is temporarily not available
                            queue instance "quad.q at m08.gc.cuny.edu<mailto:quad.q at m08.gc.cuny.edu>" dropped because it is temporarily not available
                            queue instance "all.q at m47.gc.cuny.edu<mailto:all.q at m47.gc.cuny.edu>" dropped because it is overloaded: np_load_avg=615.745000 (no load adjustment) >= 3.0
                            queue instance "all.q at m68.gc.cuny.edu<mailto:all.q at m68.gc.cuny.edu>" dropped because it is overloaded: np_load_avg=15.470000 (no load adjustment) >= 3.0
                            queue instance "instructional.q at m68.gc.cuny.edu<mailto:instructional.q at m68.gc.cuny.edu>" dropped because it is overloaded: np_load_avg=15.470000 (no load adjustment) >= 3.0
                            queue instance "x86_64.q at m47.gc.cuny.edu<mailto:x86_64.q at m47.gc.cuny.edu>" dropped because it is overloaded: np_load_avg=615.745000 (no load adjustment) >= 4.0
                            cannot run because no access to pe "gauss"
                            cannot run in PE "gauss" because it only offers 0 slots
[root at nept nept]#

Now let's look at x86_64.q

[root at nept nept]# qconf -sq x86_64.q
qname                 x86_64.q
hostlist              @coreduos
seq_no                0
load_thresholds       np_load_avg=4.0
suspend_thresholds    NONE
nsuspend              1
suspend_interval      00:05:00
priority              0
min_cpu_interval      00:05:00
processors            UNDEFINED
qtype                 BATCH INTERACTIVE
ckpt_list             NONE
pe_list               gauss mpich namd ompi
rerun                 FALSE
slots                 2
tmpdir                /tmp
shell                 /bin/bash
prolog                NONE
epilog                NONE
shell_start_mode      posix_compliant
starter_method        NONE
suspend_method        NONE
resume_method         NONE
terminate_method      NONE
notify                00:00:60
owner_list            NONE
user_lists            Research deadlineusers
xuser_lists           NONE
subordinate_list      NONE
complex_values        NONE
projects              NONE
xprojects             NONE
calendar              NONE
initial_state         default
s_rt                  INFINITY
h_rt                  INFINITY
s_cpu                 INFINITY
h_cpu                 INFINITY
s_fsize               INFINITY
h_fsize               INFINITY
s_data                INFINITY
h_data                INFINITY
s_stack               INFINITY
h_stack               INFINITY
s_core                INFINITY
h_core                INFINITY
s_rss                 INFINITY
h_rss                 INFINITY
s_vmem                INFINITY
h_vmem                INFINITY



-Chris




Thanks - FL


On Jul 12, 2009, at 5:42 PM, flengyel wrote:

> I have a number of Intel E6600 core duo systems sitting idle while
> jobs languish in the queues:
>
> m31                     lx24-amd64      2  4.00    7.7G    6.0G
> 16.0G   13.8G
> m32                     lx24-amd64      2  0.00    7.7G  149.8M
> 16.0G     0.0
> m33                     lx24-amd64      2  0.00    7.7G  320.1M
> 16.0G   22.8M
> m34                     lx24-amd64      2  0.00    7.7G  209.2M
> 16.0G   23.6M
> m35                     lx24-amd64      2  0.00    7.7G  151.1M
> 16.0G     0.0
> m36                     lx24-amd64      2  1.01    7.7G  394.7M
> 16.0G    9.1G
> m37                     lx24-amd64      2  0.00    7.7G  251.2M
> 16.0G   24.6M
> m38                     lx24-amd64      2  0.00    7.7G  215.7M
> 16.0G   24.1M
> m39                     lx24-amd64      2  0.00    7.7G  299.8M
> 16.0G   23.3M
> m40                     lx24-amd64      2  0.00    7.7G  150.3M
> 16.0G     0.0
> m41                     lx24-amd64      2  0.00    7.7G  156.8M
> 16.0G     0.0
> m42                     lx24-amd64      2  0.00    7.7G  184.0M
> 16.0G     0.0
> m43                     lx24-amd64      2  0.00    7.7G  232.7M
> 16.0G   23.5M
> m44                     lx24-amd64      2  0.00    7.7G  152.6M
> 16.0G     0.0
> m45                     lx24-amd64      2  0.00    7.7G  151.7M
> 16.0G     0.0
> m46                     lx24-amd64      2  0.00    7.7G  219.5M
> 16.0G   23.6M
> m47                     lx24-amd64      2 1.20K    7.7G    3.5G
> 16.0G     0.0
> m48                     lx24-amd64      2  0.00    7.7G  215.6M
> 16.0G   23.0M
> m49                     lx24-amd64      2  4.00    7.7G    6.4G
> 16.0G   13.4G
> m50                     lx24-amd64      2  0.00    7.7G  145.6M
> 16.0G     0.0
> m51                     lx24-amd64      2  0.00    7.7G  199.3M
> 16.0G   23.7M
> m52                     lx24-amd64      2  0.00    5.8G  151.4M
> 16.0G     0.0
> m53                     lx24-amd64      2  0.00    7.7G  222.5M
> 16.0G   23.0M
> m54                     lx24-amd64      2  0.00    7.7G  224.2M
> 16.0G   23.6M
> m55                     lx24-amd64      2  0.00    7.7G  222.6M
> 16.0G   24.4M
> m56                     lx24-amd64      2  0.00    7.7G  149.0M
> 16.0G     0.0
> m57                     lx24-amd64      2  0.00    7.7G  319.5M
> 16.0G   23.8M
> m58                     lx24-amd64      2  0.00    7.7G  118.0M
> 16.0G     0.0
> m59                     lx24-amd64      2  0.00    7.7G  157.5M
> 16.0G     0.0
> m60                     lx24-amd64      2  0.00    7.7G  206.4M
> 16.0G   24.1M
>
> I'm wondering about how to diagnose and correct this. Perhaps it's
> time to give up
> on SGE 6.0u10 and upgrade to SGE 6.2...
>
> FL
>

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