[GE users] core duo systems not accepting jobs

craffi dag at sonsorol.org
Sun Jul 12 23:39:17 BST 2009


Things look pretty good, a few queue instances down in 'au' state and
one of your x86_64 hosts in load alarm state 'a' with some insane load
average. Your quad.q hosts are almost totally maxed out.

And you do have a bunch of x86_64.q hosts with free job slots that are
totally idle.

Commenting only now on the "qstat -j" data you posted I'd zero in on
this report from the scheduler:

>                             cannot run because no access to pe "gauss"
>                             cannot run in PE "gauss" because it only
> offers 0 slot



This brings to mind a few guesses:

- Have you run out of "gauss" PE slots? How many are configured in the
PE object?

- Is your user allowed to access that PE or is there a quota or ACL
list that may be blocking them?

- Is your user part of the "Research" group? You have access control
configured on that queue via the "user_lists" parameter in the queue
config

-Chris






On Jul 12, 2009, at 6:12 PM, flengyel wrote:

>
>
> On Sun, Jul 12, 2009 at 5:50 PM, craffi <dag at sonsorol.org> wrote:
> SGE version would have nothing to do with what you are seeing.
>
> What does "qstat -f" say about those nodes? Are they in error state or
> some other state?
>
> They don't appear to be in a pending state. all.q is not used but
> x86_64.q
> and quad.q blow are used.
>
> The number of slots should be set to the number of cores.
> m01-m20 are quads and should be configured so that the slots is 4;
> and on m31-m60 the number of slots should be 2.
>
> The number of slots is set correctly on a host basis.
>
> [root at nept nept]# qstat -f
> queuename                      qtype used/tot. load_avg
> arch          states
> ----------------------------------------------------------------------------
> all.q at gccg.gc.cuny.edu         BIP   0/4       0.18     lx24-amd64
> ----------------------------------------------------------------------------
> all.q at m01.gc.cuny.edu          BIP   0/1       4.02     lx24-amd64
> ----------------------------------------------------------------------------
> all.q at m02.gc.cuny.edu          BIP   0/1       4.03     lx24-amd64
> ----------------------------------------------------------------------------
> all.q at m03.gc.cuny.edu          BIP   0/1       3.16     lx24-amd64
> ----------------------------------------------------------------------------
> all.q at m04.gc.cuny.edu          BIP   0/4       4.00     lx24-amd64
> ----------------------------------------------------------------------------
> all.q at m05.gc.cuny.edu          BIP   0/1       3.92     lx24-amd64
> ----------------------------------------------------------------------------
> all.q at m06.gc.cuny.edu          BIP   0/4       4.03     lx24-amd64
> ----------------------------------------------------------------------------
> all.q at m07.gc.cuny.edu          BIP   0/1       4.02     lx24-amd64
> ----------------------------------------------------------------------------
> all.q at m08.gc.cuny.edu          BIP   0/1       -NA-     lx24-
> amd64    au
> ----------------------------------------------------------------------------
> all.q at m09.gc.cuny.edu          BIP   0/1       4.02     lx24-amd64
> ----------------------------------------------------------------------------
> all.q at m10.gc.cuny.edu          BIP   0/1       8.02     lx24-amd64
> ----------------------------------------------------------------------------
> all.q at m11.gc.cuny.edu          BIP   0/1       0.00     lx24-amd64
> ----------------------------------------------------------------------------
> all.q at m12.gc.cuny.edu          BIP   0/4       4.00     lx24-amd64
> ----------------------------------------------------------------------------
> all.q at m13.gc.cuny.edu          BIP   0/4       4.01     lx24-amd64
> ----------------------------------------------------------------------------
> all.q at m14.gc.cuny.edu          BIP   0/4       4.00     lx24-amd64
> ----------------------------------------------------------------------------
> all.q at m15.gc.cuny.edu          BIP   0/4       4.00     lx24-amd64
> ----------------------------------------------------------------------------
> all.q at m16.gc.cuny.edu          BIP   0/1       3.97     lx24-amd64
> ----------------------------------------------------------------------------
> all.q at m17.gc.cuny.edu          BIP   0/4       4.02     lx24-amd64
> ----------------------------------------------------------------------------
> all.q at m18.gc.cuny.edu          BIP   0/1       4.02     lx24-amd64
> ----------------------------------------------------------------------------
> all.q at m19.gc.cuny.edu          BIP   0/4       4.01     lx24-amd64
> ----------------------------------------------------------------------------
> all.q at m20.gc.cuny.edu          BIP   0/1       4.00     lx24-amd64
> ----------------------------------------------------------------------------
> all.q at m31.gc.cuny.edu          BIP   0/1       4.00     lx24-amd64
> ----------------------------------------------------------------------------
> all.q at m32.gc.cuny.edu          BIP   0/1       0.00     lx24-amd64
> ----------------------------------------------------------------------------
> all.q at m33.gc.cuny.edu          BIP   0/1       0.00     lx24-amd64
> ----------------------------------------------------------------------------
> all.q at m34.gc.cuny.edu          BIP   0/1       0.00     lx24-amd64
> ----------------------------------------------------------------------------
> all.q at m35.gc.cuny.edu          BIP   0/1       0.00     lx24-amd64
> ----------------------------------------------------------------------------
> all.q at m36.gc.cuny.edu          BIP   0/1       1.02     lx24-amd64
> ----------------------------------------------------------------------------
> all.q at m37.gc.cuny.edu          BIP   0/1       0.00     lx24-amd64
> ----------------------------------------------------------------------------
> all.q at m38.gc.cuny.edu          BIP   0/1       0.00     lx24-amd64
> ----------------------------------------------------------------------------
> all.q at m39.gc.cuny.edu          BIP   0/1       0.00     lx24-amd64
> ----------------------------------------------------------------------------
> all.q at m40.gc.cuny.edu          BIP   0/1       0.00     lx24-amd64
> ----------------------------------------------------------------------------
> all.q at m41.gc.cuny.edu          BIP   0/1       0.00     lx24-amd64
> ----------------------------------------------------------------------------
> all.q at m42.gc.cuny.edu          BIP   0/1       0.00     lx24-amd64
> ----------------------------------------------------------------------------
> all.q at m43.gc.cuny.edu          BIP   0/1       0.00     lx24-amd64
> ----------------------------------------------------------------------------
> all.q at m44.gc.cuny.edu          BIP   0/1       0.00     lx24-amd64
> ----------------------------------------------------------------------------
> all.q at m45.gc.cuny.edu          BIP   0/1       0.00     lx24-amd64
> ----------------------------------------------------------------------------
> all.q at m46.gc.cuny.edu          BIP   0/1       0.00     lx24-amd64
> ----------------------------------------------------------------------------
> all.q at m47.gc.cuny.edu          BIP   0/1       1231.84  lx24-
> amd64    a
> ----------------------------------------------------------------------------
> all.q at m48.gc.cuny.edu          BIP   0/2       0.00     lx24-amd64
> ----------------------------------------------------------------------------
> all.q at m49.gc.cuny.edu          BIP   0/1       4.02     lx24-amd64
> ----------------------------------------------------------------------------
> all.q at m50.gc.cuny.edu          BIP   0/1       0.02     lx24-amd64
> ----------------------------------------------------------------------------
> all.q at m51.gc.cuny.edu          BIP   0/1       0.00     lx24-amd64
> ----------------------------------------------------------------------------
> all.q at m52.gc.cuny.edu          BIP   0/1       0.00     lx24-amd64
> ----------------------------------------------------------------------------
> all.q at m53.gc.cuny.edu          BIP   0/1       0.00     lx24-amd64
> ----------------------------------------------------------------------------
> all.q at m54.gc.cuny.edu          BIP   0/1       0.00     lx24-amd64
> ----------------------------------------------------------------------------
> all.q at m55.gc.cuny.edu          BIP   0/1       0.00     lx24-amd64
> ----------------------------------------------------------------------------
> all.q at m56.gc.cuny.edu          BIP   0/1       0.00     lx24-amd64
> ----------------------------------------------------------------------------
> all.q at m57.gc.cuny.edu          BIP   0/1       0.00     lx24-amd64
> ----------------------------------------------------------------------------
> all.q at m58.gc.cuny.edu          BIP   0/1       0.00     lx24-amd64
> ----------------------------------------------------------------------------
> all.q at m59.gc.cuny.edu          BIP   0/1       0.00     lx24-amd64
> ----------------------------------------------------------------------------
> all.q at m60.gc.cuny.edu          BIP   0/1       0.00     lx24-amd64
> ----------------------------------------------------------------------------
> all.q at m61.gc.cuny.edu          BIP   0/1       -NA-     lx24-
> x86      au
> ----------------------------------------------------------------------------
> all.q at m62.gc.cuny.edu          BIP   0/1       -NA-     lx24-
> x86      au
> ----------------------------------------------------------------------------
> all.q at m63.gc.cuny.edu          BIP   0/1       -NA-     lx24-
> x86      au
> ----------------------------------------------------------------------------
> all.q at m64.gc.cuny.edu          BIP   0/1       -NA-     lx24-
> x86      au
> ----------------------------------------------------------------------------
> all.q at m65.gc.cuny.edu          BIP   0/1       -NA-     lx24-
> x86      au
> ----------------------------------------------------------------------------
> all.q at m66.gc.cuny.edu          BIP   0/1       -NA-     lx24-
> x86      au
> ----------------------------------------------------------------------------
> all.q at m67.gc.cuny.edu          BIP   0/1       -NA-     lx24-
> x86      au
> ----------------------------------------------------------------------------
> all.q at m68.gc.cuny.edu          BIP   0/1       15.47    lx24-
> x86      a
> ----------------------------------------------------------------------------
> all.q at m69.gc.cuny.edu          BIP   0/1       -NA-     lx24-
> x86      au
> ----------------------------------------------------------------------------
> instructional.q at m61.gc.cuny.ed BIP   0/1       -NA-     lx24-
> x86      au
> ----------------------------------------------------------------------------
> instructional.q at m62.gc.cuny.ed BIP   0/1       -NA-     lx24-
> x86      au
> ----------------------------------------------------------------------------
> instructional.q at m63.gc.cuny.ed BIP   0/1       -NA-     lx24-
> x86      au
> ----------------------------------------------------------------------------
> instructional.q at m64.gc.cuny.ed BIP   0/1       -NA-     lx24-
> x86      au
> ----------------------------------------------------------------------------
> instructional.q at m65.gc.cuny.ed BIP   0/1       -NA-     lx24-
> x86      au
> ----------------------------------------------------------------------------
> instructional.q at m66.gc.cuny.ed BIP   0/1       -NA-     lx24-
> x86      au
> ----------------------------------------------------------------------------
> instructional.q at m67.gc.cuny.ed BIP   0/1       -NA-     lx24-
> x86      au
> ----------------------------------------------------------------------------
> instructional.q at m68.gc.cuny.ed BIP   0/1       15.47    lx24-
> x86      a
> ----------------------------------------------------------------------------
> instructional.q at m69.gc.cuny.ed BIP   0/1       -NA-     lx24-
> x86      au
> ----------------------------------------------------------------------------
> lp.q at m01.gc.cuny.edu           BIP   0/4       4.02     lx24-amd64
> ----------------------------------------------------------------------------
> lp.q at m14.gc.cuny.edu           BIP   0/4       4.00     lx24-amd64
> ----------------------------------------------------------------------------
> quad.q at m01.gc.cuny.edu         BIP   4/4       4.02     lx24-amd64
>   23483 0.25021 Si2TS      agreer       r     07/12/2009
> 15:45:01     4
> ----------------------------------------------------------------------------
> quad.q at m02.gc.cuny.edu         BIP   4/4       4.03     lx24-amd64
>   23489 0.25019 Si201a     agreer       r     07/12/2009
> 15:54:11     4
> ----------------------------------------------------------------------------
> quad.q at m03.gc.cuny.edu         BIP   4/4       3.16     lx24-amd64
>   23449 0.25513 armch1010A agreer       r     07/11/2009
> 09:34:40     1
>   23505 0.25000 BZDBFTS01. agreer       r     07/12/2009
> 17:02:51     2
>   23506 0.25000 BZDBFTS02. agreer       r     07/12/2009
> 17:02:51     1
> ----------------------------------------------------------------------------
> quad.q at m04.gc.cuny.edu         BIP   4/4       4.00     lx24-amd64
>   23487 0.25020 Si203      agreer       r     07/12/2009
> 15:50:11     4
> ----------------------------------------------------------------------------
> quad.q at m05.gc.cuny.edu         BIP   4/4       3.92     lx24-amd64
>   23432 0.25813 K-14-S-B3- mgreen       r     07/10/2009
> 19:52:20     4
> ----------------------------------------------------------------------------
> quad.q at m06.gc.cuny.edu         BIP   4/4       4.03     lx24-amd64
>   22532 0.32092 w84ne-onnn nkobko       r     06/28/2009
> 00:29:27     3
>   23493 0.25018 Si201c     agreer       r     07/12/2009
> 15:57:51     1
> ----------------------------------------------------------------------------
> quad.q at m07.gc.cuny.edu         BIP   4/4       4.02     lx24-amd64
>   23449 0.25513 armch1010A agreer       r     07/11/2009
> 09:34:40     1
>   23491 0.25018 Si201b     agreer       r     07/12/2009
> 15:56:31     3
> ----------------------------------------------------------------------------
> quad.q at m08.gc.cuny.edu         BIP   0/4       -NA-     lx24-
> amd64    au
> ----------------------------------------------------------------------------
> quad.q at m09.gc.cuny.edu         BIP   4/4       4.02     lx24-amd64
>   23436 0.25806 Na-10-S-B3 mgreen       r     07/10/2009
> 23:56:20     1
>   23473 0.25365 trimer6.re jschulman    r     07/12/2009
> 01:25:30     3
> ----------------------------------------------------------------------------
> quad.q at m10.gc.cuny.edu         BIP   4/4       8.02     lx24-amd64
>   23436 0.25806 Na-10-S-B3 mgreen       r     07/10/2009
> 23:56:20     2
>   23507 0.25000 BZDBFTS03. agreer       r     07/12/2009
> 17:02:51     2
> ----------------------------------------------------------------------------
> quad.q at m11.gc.cuny.edu         BIP   4/4       0.00     lx24-amd64
>   23436 0.25806 Na-10-S-B3 mgreen       r     07/10/2009
> 23:56:20     1
>   23493 0.25018 Si201c     agreer       r     07/12/2009
> 15:57:51     2
>   23505 0.25000 BZDBFTS01. agreer       r     07/12/2009
> 17:02:51     1
> ----------------------------------------------------------------------------
> quad.q at m12.gc.cuny.edu         BIP   4/4       4.00     lx24-amd64
>   19225 0.68349 P-Gly-D31. itsai        r     03/25/2009
> 00:50:04     4
> ----------------------------------------------------------------------------
> quad.q at m13.gc.cuny.edu         BIP   4/4       4.01     lx24-amd64
>   23449 0.25513 armch1010A agreer       r     07/11/2009
> 09:34:40     2
>   23473 0.25365 trimer6.re jschulman    r     07/12/2009
> 01:25:30     1
>   23507 0.25000 BZDBFTS03. agreer       r     07/12/2009
> 17:02:51     1
> ----------------------------------------------------------------------------
> quad.q at m14.gc.cuny.edu         BIP   4/4       4.00     lx24-amd64
>   22531 0.32100 w84-kr-o-c nkobko       r     06/25/2009
> 09:59:57     4
> ----------------------------------------------------------------------------
> quad.q at m15.gc.cuny.edu         BIP   4/4       4.00     lx24-amd64
>   20806 0.39568 P-Gly-Z.co itsai        r     06/10/2009
> 19:21:46     1
>   23491 0.25018 Si201b     agreer       r     07/12/2009
> 15:56:31     1
>   23505 0.25000 BZDBFTS01. agreer       r     07/12/2009
> 17:02:51     1
>   23508 0.25000 BZDBFTS04. agreer       r     07/12/2009
> 17:38:41     1
> ----------------------------------------------------------------------------
> quad.q at m16.gc.cuny.edu         BIP   4/4       3.97     lx24-amd64
>   23493 0.25018 Si201c     agreer       r     07/12/2009
> 15:57:51     1
>   23508 0.25000 BZDBFTS04. agreer       r     07/12/2009
> 17:38:41     3
> ----------------------------------------------------------------------------
> quad.q at m17.gc.cuny.edu         BIP   4/4       4.02     lx24-amd64
>   20126 0.47822 w84-ar-Onn nkobko       r     05/15/2009
> 09:13:15     4
> ----------------------------------------------------------------------------
> quad.q at m18.gc.cuny.edu         BIP   4/4       4.02     lx24-amd64
>   22532 0.32092 w84ne-onnn nkobko       r     06/28/2009
> 00:29:27     1
>   23506 0.25000 BZDBFTS02. agreer       r     07/12/2009
> 17:02:51     2
>   23507 0.25000 BZDBFTS03. agreer       r     07/12/2009
> 17:02:51     1
> ----------------------------------------------------------------------------
> quad.q at m19.gc.cuny.edu         BIP   4/4       4.01     lx24-amd64
>   20806 0.39568 P-Gly-Z.co itsai        r     06/10/2009
> 19:21:46     3
>   23506 0.25000 BZDBFTS02. agreer       r     07/12/2009
> 17:02:51     1
> ----------------------------------------------------------------------------
> quad.q at m20.gc.cuny.edu         BIP   4/4       4.00     lx24-amd64
>   23431 0.25813 Na-14-S-B3 mgreen       r     07/10/2009
> 19:44:20     4
> ----------------------------------------------------------------------------
> test.q at m62.gc.cuny.edu         BIP   0/1       -NA-     lx24-
> x86      au
> ----------------------------------------------------------------------------
> x86_64.q at m31.gc.cuny.edu       BIP   2/2       4.00     lx24-amd64
>   18481 0.75000 trimer.res jschulman    r     03/06/2009
> 19:09:12     2
> ----------------------------------------------------------------------------
> x86_64.q at m32.gc.cuny.edu       BIP   0/2       0.00     lx24-amd64
> ----------------------------------------------------------------------------
> x86_64.q at m33.gc.cuny.edu       BIP   0/2       0.00     lx24-amd64
> ----------------------------------------------------------------------------
> x86_64.q at m34.gc.cuny.edu       BIP   0/2       0.00     lx24-amd64
> ----------------------------------------------------------------------------
> x86_64.q at m35.gc.cuny.edu       BIP   0/2       0.00     lx24-amd64
> ----------------------------------------------------------------------------
> x86_64.q at m36.gc.cuny.edu       BIP   0/2       1.02     lx24-amd64
> ----------------------------------------------------------------------------
> x86_64.q at m37.gc.cuny.edu       BIP   0/2       0.00     lx24-amd64
> ----------------------------------------------------------------------------
> x86_64.q at m38.gc.cuny.edu       BIP   0/2       0.00     lx24-amd64
> ----------------------------------------------------------------------------
> x86_64.q at m39.gc.cuny.edu       BIP   0/2       0.00     lx24-amd64
> ----------------------------------------------------------------------------
> x86_64.q at m40.gc.cuny.edu       BIP   0/2       0.00     lx24-amd64
> ----------------------------------------------------------------------------
> x86_64.q at m41.gc.cuny.edu       BIP   0/2       0.00     lx24-amd64
> ----------------------------------------------------------------------------
> x86_64.q at m42.gc.cuny.edu       BIP   0/2       0.00     lx24-amd64
> ----------------------------------------------------------------------------
> x86_64.q at m43.gc.cuny.edu       BIP   0/2       0.00     lx24-amd64
> ----------------------------------------------------------------------------
> x86_64.q at m44.gc.cuny.edu       BIP   0/2       0.00     lx24-amd64
> ----------------------------------------------------------------------------
> x86_64.q at m45.gc.cuny.edu       BIP   0/2       0.00     lx24-amd64
> ----------------------------------------------------------------------------
> x86_64.q at m46.gc.cuny.edu       BIP   0/2       0.00     lx24-amd64
> ----------------------------------------------------------------------------
> x86_64.q at m47.gc.cuny.edu       BIP   0/2       1231.84  lx24-
> amd64    a
> ----------------------------------------------------------------------------
> x86_64.q at m48.gc.cuny.edu       BIP   0/2       0.00     lx24-amd64
> ----------------------------------------------------------------------------
> x86_64.q at m49.gc.cuny.edu       BIP   2/2       4.02     lx24-amd64
>   23275 0.26681 trimer5.re jschulman    r     07/08/2009
> 07:57:20     2
> ----------------------------------------------------------------------------
> x86_64.q at m50.gc.cuny.edu       BIP   0/2       0.02     lx24-amd64
> ----------------------------------------------------------------------------
> x86_64.q at m51.gc.cuny.edu       BIP   0/2       0.00     lx24-amd64
> ----------------------------------------------------------------------------
> x86_64.q at m52.gc.cuny.edu       BIP   0/2       0.00     lx24-amd64
> ----------------------------------------------------------------------------
> x86_64.q at m53.gc.cuny.edu       BIP   0/2       0.00     lx24-amd64
> ----------------------------------------------------------------------------
> x86_64.q at m54.gc.cuny.edu       BIP   0/2       0.00     lx24-amd64
> ----------------------------------------------------------------------------
> x86_64.q at m55.gc.cuny.edu       BIP   0/2       0.00     lx24-amd64
> ----------------------------------------------------------------------------
> x86_64.q at m56.gc.cuny.edu       BIP   0/2       0.00     lx24-amd64
> ----------------------------------------------------------------------------
> x86_64.q at m57.gc.cuny.edu       BIP   0/2       0.00     lx24-amd64
> ----------------------------------------------------------------------------
> x86_64.q at m58.gc.cuny.edu       BIP   0/2       0.00     lx24-amd64
> ----------------------------------------------------------------------------
> x86_64.q at m59.gc.cuny.edu       BIP   0/2       0.00     lx24-amd64
> ----------------------------------------------------------------------------
> x86_64.q at m60.gc.cuny.edu       BIP   0/2       0.00     lx24-amd64
>
> ############################################################################
>  - PENDING JOBS - PENDING JOBS - PENDING JOBS - PENDING JOBS -
> PENDING JOBS
> ############################################################################
>   23328 0.26196 test.com   mmarianski   qw    07/09/2009
> 13:40:36     2
>   23459 0.25425 NH3-s-b.co olavinda     qw    07/11/2009
> 12:58:47     2
>   23460 0.25424 OMes_s-IRC olavinda     qw    07/11/2009
> 13:03:25     2
>   23462 0.25423 OMes_s-IRC olavinda     qw    07/11/2009
> 13:04:48     2
>   23463 0.25422 OMea_s-IRC olavinda     qw    07/11/2009
> 13:11:11     2
>   23464 0.25421 OMea_s-IRC olavinda     qw    07/11/2009
> 13:12:49     2
>   23469 0.25366 tr-COOH-fr egreer       qw    07/11/2009
> 16:37:03     2
>   23470 0.25365 tr-MeOss-I egreer       qw    07/11/2009
> 16:38:45     2
>   23471 0.25365 tr-COOHae- egreer       qw    07/11/2009
> 16:39:57     2
>   23472 0.25365 tr-COOHae- egreer       qw    07/11/2009
> 16:40:49     2
>   23510 0.00000 bzdbf01.co agreer       qw    07/12/2009
> 17:02:57     4
>   23511 0.00000 bzdbf02.co agreer       qw    07/12/2009
> 17:02:57     4
>   23512 0.00000 bzdbf03.co agreer       qw    07/12/2009
> 17:02:57     4
>   23513 0.00000 bzdbf04.co agreer       qw    07/12/2009
> 17:02:57     4
>   23514 0.00000 bzDBFO102. agreer       qw    07/12/2009
> 17:02:57     4
>   23515 0.00000 bzDBFO202. agreer       qw    07/12/2009
> 17:02:58     4
>   23516 0.00000 bzDBFO203. agreer       qw    07/12/2009
> 17:02:58     4
>   23517 0.00000 bzDBFO204. agreer       qw    07/12/2009
> 17:02:58     4
> For pending jobs what does "qstat -j <jobID>" tell you about why they
> are still pending?
>
> Let's take 23459 since this is representative
>
> [root at nept nept]# qstat -j 23459
> ==============================================================
> job_number:                 23459
> exec_file:                  job_scripts/23459
> submission_time:            Sat Jul 11 12:58:47 2009
> owner:                      olavinda
> uid:                        5096
> group:                      domusers
> gid:                        1000
> sge_o_home:                 /home/nept/olavinda
> sge_o_log_name:             olavinda
> sge_o_path:                 /usr/lib64/qt-3.3/bin:/usr/kerberos/bin:/
> usr/lib/jvm/jdk1.6.0_05/bin:/home/nept/apps64/bin:/home/nept/apps64/
> ocaml/bin:/home/nept/apps64/emergent/bin:/usr/local/Trolltech/
> Qt-4.4.3/bin:/home/nept/apps64/R/bin:/home/nept/apps64/pgi/
> linux86-64/7.2/bin:/usr/lib/jvm/jdk1.6.0_12/bin:/home/nept/apps64/
> openmpi/bin:/usr/lib/jvm/jdk1.6.0_05/bin:/usr/local/sge/bin/lx24-
> amd64:/usr/local/bin:/bin:/usr/bin:/home/nept/apps64/postgres/bin:/
> home/nept/olavinda/bin
> sge_o_shell:                /bin/bash
> sge_o_workdir:              /home/nept/olavinda
> sge_o_host:                 nept
> account:                    sge
> cwd:                        /home/nept/olavinda
> path_aliases:               /tmp_mnt/ * * /
> mail_list:                  olavinda at nept.gc.cuny.edu
> notify:                     FALSE
> job_name:                   NH3-s-b.com
> jobshare:                   0
> hard_queue_list:            x86_64.q
> shell_list:                 /bin/bash
> env_list:
> script_file:                STDIN
> parallel environment:  gauss range: 2
> scheduling info:            queue instance "all.q at m08.gc.cuny.edu"
> dropped because it is temporarily not available
>                             queue instance "all.q at m61.gc.cuny.edu"
> dropped because it is temporarily not available
>                             queue instance "all.q at m62.gc.cuny.edu"
> dropped because it is temporarily not available
>                             queue instance "all.q at m63.gc.cuny.edu"
> dropped because it is temporarily not available
>                             queue instance "all.q at m64.gc.cuny.edu"
> dropped because it is temporarily not available
>                             queue instance "all.q at m65.gc.cuny.edu"
> dropped because it is temporarily not available
>                             queue instance "all.q at m66.gc.cuny.edu"
> dropped because it is temporarily not available
>                             queue instance "all.q at m67.gc.cuny.edu"
> dropped because it is temporarily not available
>                             queue instance "all.q at m69.gc.cuny.edu"
> dropped because it is temporarily not available
>                             queue instance "instructional.q at m62.gc.cuny.edu
> " dropped because it is temporarily not available
>                             queue instance "instructional.q at m61.gc.cuny.edu
> " dropped because it is temporarily not available
>                             queue instance "instructional.q at m66.gc.cuny.edu
> " dropped because it is temporarily not available
>                             queue instance "instructional.q at m63.gc.cuny.edu
> " dropped because it is temporarily not available
>                             queue instance "instructional.q at m64.gc.cuny.edu
> " dropped because it is temporarily not available
>                             queue instance "instructional.q at m65.gc.cuny.edu
> " dropped because it is temporarily not available
>                             queue instance "instructional.q at m67.gc.cuny.edu
> " dropped because it is temporarily not available
>                             queue instance "instructional.q at m69.gc.cuny.edu
> " dropped because it is temporarily not available
>                             queue instance "test.q at m62.gc.cuny.edu"
> dropped because it is temporarily not available
>                             queue instance "quad.q at m08.gc.cuny.edu"
> dropped because it is temporarily not available
>                             queue instance "all.q at m47.gc.cuny.edu"
> dropped because it is overloaded: np_load_avg=615.745000 (no load
> adjustment) >= 3.0
>                             queue instance "all.q at m68.gc.cuny.edu"
> dropped because it is overloaded: np_load_avg=15.470000 (no load
> adjustment) >= 3.0
>                             queue instance "instructional.q at m68.gc.cuny.edu
> " dropped because it is overloaded: np_load_avg=15.470000 (no load
> adjustment) >= 3.0
>                             queue instance
> "x86_64.q at m47.gc.cuny.edu" dropped because it is overloaded:
> np_load_avg=615.745000 (no load adjustment) >= 4.0
>                             cannot run because no access to pe "gauss"
>                             cannot run in PE "gauss" because it only
> offers 0 slots
> [root at nept nept]#
>
> Now let's look at x86_64.q
>
> [root at nept nept]# qconf -sq x86_64.q
> qname                 x86_64.q
> hostlist              @coreduos
> seq_no                0
> load_thresholds       np_load_avg=4.0
> suspend_thresholds    NONE
> nsuspend              1
> suspend_interval      00:05:00
> priority              0
> min_cpu_interval      00:05:00
> processors            UNDEFINED
> qtype                 BATCH INTERACTIVE
> ckpt_list             NONE
> pe_list               gauss mpich namd ompi
> rerun                 FALSE
> slots                 2
> tmpdir                /tmp
> shell                 /bin/bash
> prolog                NONE
> epilog                NONE
> shell_start_mode      posix_compliant
> starter_method        NONE
> suspend_method        NONE
> resume_method         NONE
> terminate_method      NONE
> notify                00:00:60
> owner_list            NONE
> user_lists            Research deadlineusers
> xuser_lists           NONE
> subordinate_list      NONE
> complex_values        NONE
> projects              NONE
> xprojects             NONE
> calendar              NONE
> initial_state         default
> s_rt                  INFINITY
> h_rt                  INFINITY
> s_cpu                 INFINITY
> h_cpu                 INFINITY
> s_fsize               INFINITY
> h_fsize               INFINITY
> s_data                INFINITY
> h_data                INFINITY
> s_stack               INFINITY
> h_stack               INFINITY
> s_core                INFINITY
> h_core                INFINITY
> s_rss                 INFINITY
> h_rss                 INFINITY
> s_vmem                INFINITY
> h_vmem                INFINITY
>
>
>
> -Chris
>
>
>
>
> Thanks - FL
>
>
> On Jul 12, 2009, at 5:42 PM, flengyel wrote:
>
> > I have a number of Intel E6600 core duo systems sitting idle while
> > jobs languish in the queues:
> >
> > m31                     lx24-amd64      2  4.00    7.7G    6.0G
> > 16.0G   13.8G
> > m32                     lx24-amd64      2  0.00    7.7G  149.8M
> > 16.0G     0.0
> > m33                     lx24-amd64      2  0.00    7.7G  320.1M
> > 16.0G   22.8M
> > m34                     lx24-amd64      2  0.00    7.7G  209.2M
> > 16.0G   23.6M
> > m35                     lx24-amd64      2  0.00    7.7G  151.1M
> > 16.0G     0.0
> > m36                     lx24-amd64      2  1.01    7.7G  394.7M
> > 16.0G    9.1G
> > m37                     lx24-amd64      2  0.00    7.7G  251.2M
> > 16.0G   24.6M
> > m38                     lx24-amd64      2  0.00    7.7G  215.7M
> > 16.0G   24.1M
> > m39                     lx24-amd64      2  0.00    7.7G  299.8M
> > 16.0G   23.3M
> > m40                     lx24-amd64      2  0.00    7.7G  150.3M
> > 16.0G     0.0
> > m41                     lx24-amd64      2  0.00    7.7G  156.8M
> > 16.0G     0.0
> > m42                     lx24-amd64      2  0.00    7.7G  184.0M
> > 16.0G     0.0
> > m43                     lx24-amd64      2  0.00    7.7G  232.7M
> > 16.0G   23.5M
> > m44                     lx24-amd64      2  0.00    7.7G  152.6M
> > 16.0G     0.0
> > m45                     lx24-amd64      2  0.00    7.7G  151.7M
> > 16.0G     0.0
> > m46                     lx24-amd64      2  0.00    7.7G  219.5M
> > 16.0G   23.6M
> > m47                     lx24-amd64      2 1.20K    7.7G    3.5G
> > 16.0G     0.0
> > m48                     lx24-amd64      2  0.00    7.7G  215.6M
> > 16.0G   23.0M
> > m49                     lx24-amd64      2  4.00    7.7G    6.4G
> > 16.0G   13.4G
> > m50                     lx24-amd64      2  0.00    7.7G  145.6M
> > 16.0G     0.0
> > m51                     lx24-amd64      2  0.00    7.7G  199.3M
> > 16.0G   23.7M
> > m52                     lx24-amd64      2  0.00    5.8G  151.4M
> > 16.0G     0.0
> > m53                     lx24-amd64      2  0.00    7.7G  222.5M
> > 16.0G   23.0M
> > m54                     lx24-amd64      2  0.00    7.7G  224.2M
> > 16.0G   23.6M
> > m55                     lx24-amd64      2  0.00    7.7G  222.6M
> > 16.0G   24.4M
> > m56                     lx24-amd64      2  0.00    7.7G  149.0M
> > 16.0G     0.0
> > m57                     lx24-amd64      2  0.00    7.7G  319.5M
> > 16.0G   23.8M
> > m58                     lx24-amd64      2  0.00    7.7G  118.0M
> > 16.0G     0.0
> > m59                     lx24-amd64      2  0.00    7.7G  157.5M
> > 16.0G     0.0
> > m60                     lx24-amd64      2  0.00    7.7G  206.4M
> > 16.0G   24.1M
> >
> > I'm wondering about how to diagnose and correct this. Perhaps it's
> > time to give up
> > on SGE 6.0u10 and upgrade to SGE 6.2...
> >
> > FL
> >
>
> ------------------------------------------------------
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>
> To unsubscribe from this discussion, e-mail: [users-unsubscribe at gridengine.sunsource.net
> ].
>

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