[GE users] qsh

pollinger harald.pollinger at sun.com
Fri Jun 26 09:46:17 BST 2009


Is this problem host dependent? Please force the qsh to run on each host 
by submitting:

# qsh -l h=celaeno.sron.nl
# qsh -l h=merope.sron.nl
# qsh -l h=pleione.sron.nl
# qsh -l h=taygeta.sron.nl

If not, please post the "qconf -sconf", "qconf -ssconf" and "qconf -sq 
all_8max.q" output.

Regards,
Harald


pvdmeer wrote:
> Dear SGE users,
> 
> Where yesterday things seemed to be fine, SGE now fails to schedule qsh
> after a few attempts. The first times it works, then it fails, and doesn't
> seem to recover. The logs show nothing this time. And no error states in
> qstat -f.
> 
> Qacct came up with this:
> 
> celaeno:~# qacct -j 2730
> ==============================================================
> qname        all_8max.q
> hostname     celaeno.sron.nl
> group        eos
> owner        pieterm
> project      NONE
> department   defaultdepartment
> jobname      INTERACTIVE
> jobnumber    2730
> taskid       undefined
> account      sge
> priority     0
> qsub_time    Fri Jun 26 09:38:46 2009
> start_time   Fri Jun 26 09:38:46 2009
> end_time     Fri Jun 26 09:38:46 2009
> granted_pe   NONE
> slots        1
> failed       0
> exit_status  1
> ru_wallclock 0
> ru_utime     0.000
> ru_stime     0.004
> ru_maxrss    0
> ru_ixrss     0
> ru_ismrss    0
> ru_idrss     0
> ru_isrss     0
> ru_minflt    810
> ru_majflt    0
> ru_nswap     0
> ru_inblock   0
> ru_oublock   8
> ru_msgsnd    0
> ru_msgrcv    0
> ru_nsignals  0
> ru_nvcsw     24
> ru_nivcsw    0
> cpu          0.004
> mem          0.000
> io           0.000
> iow          0.000
> maxvmem      0.000
> arid         undefined
> 
> Qstat output:
> 
> pleione [~]% qstat -f
> queuename                      qtype resv/used/tot. load_avg arch
> states
> ---------------------------------------------------------------------------------
> all_8max.q at celaeno.sron.nl     BIP   0/0/8          0.00     lx26-amd64
> ---------------------------------------------------------------------------------
> all_8max.q at merope.sron.nl      BIP   0/3/8          3.01     lx26-amd64
> ---------------------------------------------------------------------------------
> all_8max.q at pleione.sron.nl     BIP   0/0/8          4.00     lx26-amd64
> ---------------------------------------------------------------------------------
> all_8max.q at taygeta.sron.nl     BIP   0/1/8          1.94     lx26-amd64
> 
> Seems there are plenty of slots left on the machines..
> What could be the cause of qsh failing after a couple of attempts? Any help
> would be appreciated.
> 
> With kind regards,
> 
> Pieter van der Meer
> 
> 
> 
> 
> On Thu, Jun 25, 2009 at 6:59 PM, Pieter van der Meer <pvdmeer at gmail.com>wrote:
> 
>> Hey,
>>
>> I seem to be progressing. I just installed xterm on all machines, which was
>> required by "qsh". Checking the logs helped.
>> I can run qsh now, it shows an xterm window running csh, so everything's
>> fine.
>>
>> With kind regards,
>>
>> Pieter
>>
>>
> 
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-- 
Sun Microsystems GmbH         Harald Pollinger
Dr.-Leo-Ritter-Str. 7         Sun Grid Engine Engineering
D-93049 Regensburg            Phone: +49 (0)941 3075-209  (x60209)
Germany                       Fax: +49 (0)941 3075-222  (x60222)
http://www.sun.com/gridware
mailto:harald.pollinger at sun.com
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