[GE users] Linux SPARC install problems

rayson rayrayson at gmail.com
Tue Mar 31 15:02:16 BST 2009


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Pay attention to the message "warnings being treated as errors".

So your gcc version is too sensitive, and aimk passes "-Werror" (=
make all warnings into errors) to gcc.

The workaround is to not ask gcc to treat warnings as warnings and not
turn them into error, which is the default setting anyway... so you
will need to go into aimk and remove the "-Werror" flags.

Rayson



On 3/31/09, wdowling <will.dowling at nuim.ie> wrote:
> -I../daemons/schedd -I../clients/common -I. -fPIC -c
> ../libs/sgeobj/config.ccc1: warnings being treated as errors
> ../libs/sgeobj/config.c: In function ?set_conf_enum?:
> ../libs/sgeobj/config.c:749: error: format not a string literal and no
> format arguments
> make: *** [config.o] Error 1
> not done
>
> I'm still stuck I guess!
>
> cheers,
> Will
>
>
> rayson wrote:
> > Check your Java installation, make sure that the Java class path and
> > Java home ($JAVA_HOME) are setup correctly.
> >
> > If you don't have java installed, a quick fix is to add aimk flags:
> > -no-java -no-jni
> >
> > Rayson
> >
> >
> >
> > On 3/26/09, wdowling <will.dowling at nuim.ie> wrote:
> >
> >> Hi everyone,
> >> I'm new to this list so I hope I'm following correct etiquette. I have
> >> several SPARC workstations and server I would like to install GridEngine
> >> on. I have Ubuntu 8.10 (Intrepid) installed and things seem to be going
> >> smoothly. I downloaded the CVS source and aside from a couple problems I
> >> managed to get to the 'aimk -only-core' stage. This is where it
> >> generates the following errors:
> >>
> >> will at ncg002:~/gridengine/source$ ./aimk -only-core
> >> Building in directory: /home/will/gridengine/source
> >> making in LINUXSPARC_26/ for LINUXSPARC at host ncg002
> >> _________C_O_R_E__S_Y_S_T_E_M_____________
> >> gcc -O3 -Wall -Werror -Wstrict-prototypes -DUSE_POLL -DLINUX
> >> -DLINUXSPARC -DLINUXSPARC_26 -D_GNU_SOURCE -DGETHOSTBYNAME_R6
> >> -DGETHOSTBYADDR_R8 -DLOAD_OPENSSL
> >> -I/off_home/gridengine/db-4.4.20/lx26-sparc/include/
> >> -DSGE_ARCH_STRING=lx26-sparc -DTARGET_32BIT -DSPOOLING_dynamic -DSECURE
> >> -I/off_home/gridengine/openssl-0.9.8h-origin/lx26-sparc/include
> >> -Wno-strict-aliasing -D_FILE_OFFSET_BITS=64
> >> -D__SGE_COMPILE_WITH_GETTEXT__
> >> -I/home/will/gridengine/source/3rdparty/gettext/LINUXSPARC/include
> >> -D__SGE_NO_USERMAPPING__ -I../common -I../libs -I../libs/uti
> >> -I../libs/juti -I../libs/gdi -I../libs/japi -I../libs/sgeobj
> >> -I../libs/cull -I../libs/rmon -I../libs/comm -I../libs/comm/lists
> >> -I../libs/sched -I../libs/evc -I../libs/evm -I../libs/mir -I../libs/lck
> >> -I../daemons/common -I../daemons/qmaster -I../daemons/execd
> >> -I../daemons/schedd -I../clients/common -I. -I/usr/include
> >> -I/usr/include/linux -fPIC -c ../libs/sgeobj/config.c
> >> In file included from /usr/include/stdio.h:75,
> >> from ../libs/sgeobj/config.c:33:
> >> /usr/include/libio.h:332: error: expected specifier-qualifier-list
> >> before ?size_t?
> >> /usr/include/libio.h:364: error: expected declaration specifiers or
> >> ?...? before ?size_t?
> >> /usr/include/libio.h:373: error: expected declaration specifiers or
> >> ?...? before ?size_t?
> >> /usr/include/libio.h:493: error: expected ?=?, ?,?, ?;?, ?asm? or
> >> ?__attribute__? before ?_IO_sgetn?
> >> In file included from ../libs/sgeobj/config.c:33:
> >> /usr/include/stdio.h:294: error: expected declaration specifiers or
> >> ?...? before ?size_t?
> >> /usr/include/stdio.h:300: error: expected declaration specifiers or
> >> ?...? before ?size_t?
> >> /usr/include/stdio.h:312: error: expected declaration specifiers or
> >> ?...? before ?size_t?
> >> /usr/include/stdio.h:319: error: expected declaration specifiers or
> >> ?...? before ?size_t?
> >> /usr/include/stdio.h:361: error: expected declaration specifiers or
> >> ?...? before ?size_t?
> >> /usr/include/stdio.h:363: error: format string argument not a string type
> >> /usr/include/stdio.h:365: error: expected declaration specifiers or
> >> ?...? before ?size_t?
> >> /usr/include/stdio.h:367: error: format string argument not a string type
> >> /usr/include/stdio.h:635: error: expected declaration specifiers or
> >> ?...? before ?size_t?
> >> /usr/include/stdio.h:638: error: expected declaration specifiers or
> >> ?...? before ?size_t?
> >> /usr/include/stdio.h:648: error: expected declaration specifiers or
> >> ?...? before ?size_t?
> >> /usr/include/stdio.h:678: error: expected ?=?, ?,?, ?;?, ?asm? or
> >> ?__attribute__? before ?fread?
> >> /usr/include/stdio.h:684: error: expected ?=?, ?,?, ?;?, ?asm? or
> >> ?__attribute__? before ?fwrite?
> >> /usr/include/stdio.h:706: error: expected ?=?, ?,?, ?;?, ?asm? or
> >> ?__attribute__? before ?fread_unlocked?
> >> /usr/include/stdio.h:708: error: expected ?=?, ?,?, ?;?, ?asm? or
> >> ?__attribute__? before ?fwrite_unlocked?
> >> In file included from /usr/include/stdio.h:903,
> >> from ../libs/sgeobj/config.c:33:
> >> /usr/include/bits/stdio.h:116: error: expected declaration specifiers or
> >> ?...? before ?size_t?
> >> /usr/include/bits/stdio.h: In function ?getline?:
> >> /usr/include/bits/stdio.h:118: error: ?__n? undeclared (first use in
> >> this function)
> >> /usr/include/bits/stdio.h:118: error: (Each undeclared identifier is
> >> reported only once
> >> /usr/include/bits/stdio.h:118: error: for each function it appears in.)
> >> /usr/include/bits/stdio.h:118: error: too many arguments to function
> >> ?__getdelim?
> >> In file included from ../libs/sgeobj/config.c:35:
> >> /usr/include/strings.h: At top level:
> >> /usr/include/strings.h:34: error: expected declaration specifiers or
> >> ?...? before ?size_t?
> >> /usr/include/strings.h:38: error: expected declaration specifiers or
> >> ?...? before ?size_t?
> >> /usr/include/strings.h:41: error: expected declaration specifiers or
> >> ?...? before ?size_t?
> >> /usr/include/strings.h:58: error: expected declaration specifiers or
> >> ?...? before ?size_t?
> >> In file included from ../libs/sgeobj/config.c:37:
> >> /usr/include/stdlib.h:140: error: expected ?=?, ?,?, ?;?, ?asm? or
> >> ?__attribute__? before ?__ctype_get_mb_cur_max?
> >> In file included from /usr/include/sys/types.h:133,
> >> from /usr/include/stdlib.h:320,
> >> from ../libs/sgeobj/config.c:37:
> >> /usr/include/linux/time.h:10: error: expected specifier-qualifier-list
> >> before ?time_t?
> >> /usr/include/linux/time.h:16: error: expected specifier-qualifier-list
> >> before ?time_t?
> >> In file included from /usr/include/sys/select.h:46,
> >> from /usr/include/sys/types.h:220,
> >> from /usr/include/stdlib.h:320,
> >> from ../libs/sgeobj/config.c:37:
> >> /usr/include/bits/time.h:70: error: redefinition of ?struct timeval?
> >> In file included from ../libs/sgeobj/config.c:37:
> >> /usr/include/stdlib.h:337: error: expected declaration specifiers or
> >> ?...? before ?size_t?
> >> /usr/include/stdlib.h:367: error: expected declaration specifiers or
> >> ?...? before ?size_t?
> >> /usr/include/stdlib.h:369: error: nonnull argument with out-of-range
> >> operand number (argument 1, operand 4)
> >> /usr/include/stdlib.h:471: error: expected ?)? before ?__size?
> >> /usr/include/stdlib.h:473: error: expected ?)? before ?__nmemb?
> >> /usr/include/stdlib.h:485: error: expected declaration specifiers or
> >> ?...? before ?size_t?
> >> In file included from /usr/include/stdlib.h:497,
> >> from ../libs/sgeobj/config.c:37:
> >> /usr/include/alloca.h:33: error: expected ?)? before ?__size?
> >> In file included from ../libs/sgeobj/config.c:37:
> >> /usr/include/stdlib.h:502: error: expected ?)? before ?__size?
> >> /usr/include/stdlib.h:507: error: expected declaration specifiers or
> >> ?...? before ?size_t?
> >> /usr/include/stdlib.h:507: error: expected declaration specifiers or
> >> ?...? before ?size_t?
> >> /usr/include/stdlib.h:684: error: expected declaration specifiers or
> >> ?...? before ?size_t?
> >> /usr/include/stdlib.h:684: error: expected declaration specifiers or
> >> ?...? before ?size_t?
> >> /usr/include/stdlib.h:685: error: nonnull argument with out-of-range
> >> operand number (argument 1, operand 5)
> >> /usr/include/stdlib.h:689: error: expected declaration specifiers or
> >> ?...? before ?size_t?
> >> /usr/include/stdlib.h:689: error: expected declaration specifiers or
> >> ?...? before ?size_t?
> >> /usr/include/stdlib.h:690: error: nonnull argument with out-of-range
> >> operand number (argument 1, operand 4)
> >> /usr/include/stdlib.h:692: error: expected declaration specifiers or
> >> ?...? before ?size_t?
> >> /usr/include/stdlib.h:692: error: expected declaration specifiers or
> >> ?...? before ?size_t?
> >> /usr/include/stdlib.h:694: error: nonnull argument with out-of-range
> >> operand number (argument 1, operand 4)
> >> /usr/include/stdlib.h:767: error: expected declaration specifiers or
> >> ?...? before ?size_t?
> >> /usr/include/stdlib.h:770: error: expected declaration specifiers or
> >> ?...? before ?size_t?
> >> /usr/include/stdlib.h:774: error: expected declaration specifiers or
> >> ?...? before ?size_t?
> >> /usr/include/stdlib.h:778: error: expected declaration specifiers or
> >> ?...? before ?size_t?
> >> /usr/include/stdlib.h:787: error: expected declaration specifiers or
> >> ?...? before ?size_t?
> >> /usr/include/stdlib.h:790: error: expected ?)? before ?*? token
> >> /usr/include/stdlib.h:794: error: expected declaration specifiers or
> >> ?...? before ?wchar_t?
> >> /usr/include/stdlib.h:798: error: expected ?=?, ?,?, ?;?, ?asm? or
> >> ?__attribute__? before ?mbstowcs?
> >> /usr/include/stdlib.h:801: error: expected ?=?, ?,?, ?;?, ?asm? or
> >> ?__attribute__? before ?wcstombs?
> >> /usr/include/stdlib.h:864: error: expected declaration specifiers or
> >> ?...? before ?size_t?
> >> In file included from ../libs/cull/cull_list.h:42,
> >> from ../libs/cull/cull_listP.h:35,
> >> from ../libs/cull/cull.h:37,
> >> from ../libs/sgeobj/config.c:39:
> >> ../libs/cull/pack.h:101: error: expected specifier-qualifier-list before
> >> ?size_t?
> >> In file included from ../libs/cull/cull_list.h:43,
> >> from ../libs/cull/cull_listP.h:35,
> >> from ../libs/cull/cull.h:37,
> >> from ../libs/sgeobj/config.c:39:
> >> ../libs/uti/sge_dstring.h:66: error: expected specifier-qualifier-list
> >> before ?size_t?
> >> ../libs/uti/sge_dstring.h:72: error: expected declaration specifiers or
> >> ?...? before ?size_t?
> >> ../libs/uti/sge_dstring.h:77: error: expected declaration specifiers or
> >> ?...? before ?time_t?
> >> ../libs/uti/sge_dstring.h:93: error: expected ?=?, ?,?, ?;?, ?asm? or
> >> ?__attribute__? before ?sge_dstring_strlen?
> >> ../libs/uti/sge_dstring.h:95: error: expected ?=?, ?,?, ?;?, ?asm? or
> >> ?__attribute__? before ?sge_dstring_remaining?
> >> In file included from ../libs/cull/cull.h:47,
> >> from ../libs/sgeobj/config.c:39:
> >> ../libs/cull/cull_pack.h:58: error: expected declaration specifiers or
> >> ?...? before ?size_t?
> >> ../libs/cull/cull_pack.h:58: error: expected declaration specifiers or
> >> ?...? before ?size_t?
> >> In file included from ../libs/uti/sge_parse_num_par.h:36,
> >> from ../libs/sgeobj/config.c:40:
> >> /usr/include/sys/time.h:58: error: redefinition of ?struct timezone?
> >> /usr/include/sys/time.h:96: error: expected identifier before numeric
> >> constant
> >> /usr/include/sys/time.h:110: error: redefinition of ?struct itimerval?
> >> In file included from /usr/include/asm/signal.h:7,
> >> from /usr/include/linux/signal.h:4,
> >> from /usr/include/pthread.h:29,
> >> from ../libs/comm/lists/cl_lists.h:39,
> >> from ../libs/comm/cl_commlib.h:39,
> >> from ../libs/rmon/rmon.h:39,
> >> from ../libs/rmon/sgermon.h:38,
> >> from ../libs/sgeobj/config.c:41:
> >> /usr/include/asm-sparc/signal.h:102: error: conflicting types for ?sigset_t?
> >> /usr/include/sys/select.h:38: error: previous declaration of ?sigset_t?
> >> was here
> >> In file included from /usr/include/asm-sparc/siginfo.h:11,
> >> from /usr/include/asm/siginfo.h:7,
> >> from /usr/include/linux/signal.h:5,
> >> from /usr/include/pthread.h:29,
> >> from ../libs/comm/lists/cl_lists.h:39,
> >> from ../libs/comm/cl_commlib.h:39,
> >> from ../libs/rmon/rmon.h:39,
> >> from ../libs/rmon/sgermon.h:38,
> >> from ../libs/sgeobj/config.c:41:
> >> /usr/include/asm-generic/siginfo.h:55: error: expected
> >> specifier-qualifier-list before ?timer_t?
> >> /usr/include/asm-generic/siginfo.h:74: error: expected
> >> specifier-qualifier-list before ?clock_t?
> >> In file included from ../libs/comm/lists/cl_lists.h:39,
> >> from ../libs/comm/cl_commlib.h:39,
> >> from ../libs/rmon/rmon.h:39,
> >> from ../libs/rmon/sgermon.h:38,
> >> from ../libs/sgeobj/config.c:41:
> >> /usr/include/pthread.h:297: error: expected declaration specifiers or
> >> ?...? before ?size_t?
> >> /usr/include/pthread.h:298: error: nonnull argument with out-of-range
> >> operand number (argument 1, operand 2)
> >> /usr/include/pthread.h:302: error: expected declaration specifiers or
> >> ?...? before ?size_t?
> >> /usr/include/pthread.h:361: error: expected declaration specifiers or
> >> ?...? before ?size_t?
> >> /usr/include/pthread.h:362: error: nonnull argument with out-of-range
> >> operand number (argument 1, operand 2)
> >> /usr/include/pthread.h:368: error: expected declaration specifiers or
> >> ?...? before ?size_t?
> >> /usr/include/pthread.h:375: error: expected declaration specifiers or
> >> ?...? before ?size_t?
> >> /usr/include/pthread.h:376: error: nonnull argument with out-of-range
> >> operand number (argument 1, operand 3)
> >> /usr/include/pthread.h:382: error: expected declaration specifiers or
> >> ?...? before ?size_t?
> >> /usr/include/pthread.h:389: error: expected declaration specifiers or
> >> ?...? before ?size_t?
> >> /usr/include/pthread.h:390: error: expected ?;?, ?,? or ?)? before ?*? token
> >> /usr/include/pthread.h:396: error: expected declaration specifiers or
> >> ?...? before ?size_t?
> >> /usr/include/pthread.h:397: error: expected declaration specifiers or
> >> ?...? before ?cpu_set_t?
> >> /usr/include/pthread.h:398: error: nonnull argument with out-of-range
> >> operand number (argument 1, operand 3)
> >> /usr/include/pthread.h:446: error: expected declaration specifiers or
> >> ?...? before ?size_t?
> >> /usr/include/pthread.h:447: error: expected ?;?, ?,? or ?)? before ?*? token
> >> /usr/include/pthread.h:451: error: expected declaration specifiers or
> >> ?...? before ?size_t?
> >> /usr/include/pthread.h:452: error: expected declaration specifiers or
> >> ?...? before ?cpu_set_t?
> >> /usr/include/pthread.h:453: error: nonnull argument with out-of-range
> >> operand number (argument 1, operand 3)
> >> In file included from /usr/include/sys/uio.h:29,
> >> from /usr/include/sys/socket.h:28,
> >> from /usr/include/netinet/in.h:25,
> >> from /usr/include/arpa/inet.h:23,
> >> from ../libs/comm/cl_xml_parsing.h:36,
> >> from ../libs/comm/cl_data_types.h:42,
> >> from ../libs/comm/cl_commlib.h:40,
> >> from ../libs/rmon/rmon.h:39,
> >> from ../libs/rmon/sgermon.h:38,
> >> from ../libs/sgeobj/config.c:41:
> >> /usr/include/bits/uio.h:47: error: expected specifier-qualifier-list
> >> before ?size_t?
> >> In file included from /usr/include/sys/socket.h:36,
> >> from /usr/include/netinet/in.h:25,
> >> from /usr/include/arpa/inet.h:23,
> >> from ../libs/comm/cl_xml_parsing.h:36,
> >> from ../libs/comm/cl_data_types.h:42,
> >> from ../libs/comm/cl_commlib.h:40,
> >> from ../libs/rmon/rmon.h:39,
> >> from ../libs/rmon/sgermon.h:38,
> >> from ../libs/sgeobj/config.c:41:
> >> /usr/include/bits/socket.h:225: error: expected specifier-qualifier-list
> >> before ?size_t?
> >> /usr/include/bits/socket.h:239: error: expected specifier-qualifier-list
> >> before ?size_t?
> >> /usr/include/bits/socket.h: In function ?__cmsg_nxthdr?:
> >> /usr/include/bits/socket.h:276: error: ?size_t? undeclared (first use in
> >> this function)
> >> /usr/include/bits/socket.h:276: error: expected ?)? before ?__cmsg?
> >> /usr/include/bits/socket.h:281: error: ?struct cmsghdr? has no member
> >> named ?cmsg_len?
> >> /usr/include/bits/socket.h:281: error: expected ?)? before ?~? token
> >> /usr/include/bits/socket.h:282: error: ?struct msghdr? has no member
> >> named ?msg_control?
> >> /usr/include/bits/socket.h:283: error: ?struct msghdr? has no member
> >> named ?msg_controllen?
> >> /usr/include/bits/socket.h:284: error: ?struct cmsghdr? has no member
> >> named ?cmsg_len?
> >> /usr/include/bits/socket.h:284: error: expected ?)? before ?~? token
> >> /usr/include/bits/socket.h:285: error: ?struct msghdr? has no member
> >> named ?msg_control?
> >> /usr/include/bits/socket.h:285: error: ?struct msghdr? has no member
> >> named ?msg_controllen?
> >> In file included from /usr/include/netinet/in.h:25,
> >> from /usr/include/arpa/inet.h:23,
> >> from ../libs/comm/cl_xml_parsing.h:36,
> >> from ../libs/comm/cl_data_types.h:42,
> >> from ../libs/comm/cl_commlib.h:40,
> >> from ../libs/rmon/rmon.h:39,
> >> from ../libs/rmon/sgermon.h:38,
> >> from ../libs/sgeobj/config.c:41:
> >> /usr/include/sys/socket.h: At top level:
> >> /usr/include/sys/socket.h:137: error: expected declaration specifiers or
> >> ?...? before ?size_t?
> >> /usr/include/sys/socket.h:144: error: expected declaration specifiers or
> >> ?...? before ?size_t?
> >> /usr/include/sys/socket.h:151: error: expected declaration specifiers or
> >> ?...? before ?size_t?
> >> /usr/include/sys/socket.h:162: error: expected declaration specifiers or
> >> ?...? before ?size_t?
> >> In file included from ../libs/comm/cl_xml_parsing.h:36,
> >> from ../libs/comm/cl_data_types.h:42,
> >> from ../libs/comm/cl_commlib.h:40,
> >> from ../libs/rmon/rmon.h:39,
> >> from ../libs/rmon/sgermon.h:38,
> >> from ../libs/sgeobj/config.c:41:
> >> /usr/include/arpa/inet.h:78: error: expected declaration specifiers or
> >> ?...? before ?size_t?
> >> /usr/include/arpa/inet.h:84: error: expected declaration specifiers or
> >> ?...? before ?size_t?
> >> /usr/include/arpa/inet.h:90: error: expected declaration specifiers or
> >> ?...? before ?size_t?
> >> In file included from ../libs/sgeobj/config.c:44:
> >> ../libs/uti/sge_string.h:94: error: expected ?=?, ?,?, ?;?, ?asm? or
> >> ?__attribute__? before ?sge_strlcpy?
> >> cc1: warnings being treated as errors
> >> ../libs/sgeobj/config.c: In function ?read_config_list?:
> >> ../libs/sgeobj/config.c:112: warning: implicit declaration of function
> >> ?strcmp?
> >> ../libs/sgeobj/config.c:122: warning: implicit declaration of function
> >> ?strchr?
> >> ../libs/sgeobj/config.c:122: warning: incompatible implicit declaration
> >> of built-in function ?strchr?
> >> ../libs/sgeobj/config.c:137: warning: implicit declaration of function
> >> ?strlen?
> >> ../libs/sgeobj/config.c:137: warning: incompatible implicit declaration
> >> of built-in function ?strlen?
> >> ../libs/sgeobj/config.c:140: warning: incompatible implicit declaration
> >> of built-in function ?strchr?
> >> ../libs/sgeobj/config.c: In function ?get_conf_value?:
> >> ../libs/sgeobj/config.c:261: warning: implicit declaration of function
> >> ?strcpy?
> >> ../libs/sgeobj/config.c:261: warning: incompatible implicit declaration
> >> of built-in function ?strcpy?
> >> ../libs/sgeobj/config.c: In function ?set_conf_string?:
> >> ../libs/sgeobj/config.c:303: warning: incompatible implicit declaration
> >> of built-in function ?strcpy?
> >> ../libs/sgeobj/config.c:307: warning: incompatible implicit declaration
> >> of built-in function ?strcpy?
> >> ../libs/sgeobj/config.c:311: warning: incompatible implicit declaration
> >> of built-in function ?strcpy?
> >> ../libs/sgeobj/config.c: In function ?set_conf_double?:
> >> ../libs/sgeobj/config.c:561: error: too many arguments to function
> >> ?strncasecmp?
> >> ../libs/sgeobj/config.c: In function ?set_conf_list?:
> >> ../libs/sgeobj/config.c:834: warning: incompatible implicit declaration
> >> of built-in function ?strcpy?
> >> ../libs/sgeobj/config.c:838: warning: incompatible implicit declaration
> >> of built-in function ?strcpy?
> >> ../libs/sgeobj/config.c:842: warning: incompatible implicit declaration
> >> of built-in function ?strcpy?
> >> make: *** [config.o] Error 1
> >> not done
> >>
> >> I have searched around and found a couple people with similar errors but
> >> no solutions. I have only basic familiarization with C so my guesses are
> >> scarce. Has anyone got any ideas if this is a SPARC/C library/GridEngine
> >> source problem?
> >>
> >> Thanks,
> >> Will
> >>
> >> --
> >>
> >> ------------------------------------------------------
> >> http://gridengine.sunsource.net/ds/viewMessage.do?dsForumId=38&dsMessageId=143809
> >>
> >> To unsubscribe from this discussion, e-mail: [users-unsubscribe at gridengine.sunsource.net].
> >>
> >>
> >
> > ------------------------------------------------------
> > http://gridengine.sunsource.net/ds/viewMessage.do?dsForumId=38&dsMessageId=149381
> >
> > To unsubscribe from this discussion, e-mail: [users-unsubscribe at gridengine.sunsource.net].
> >
> >
>
>
> --
>
> ------------------------------------------------------
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