[GE users] SGE over yellowdog PS3

jigzat jigzat at gmail.com
Fri May 22 23:24:29 BST 2009


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Hello everyone, I'm trying to setup a small testing GRID with 3 Playstation 3's running Yellowdog 6.1 for my gradation thesis. I was following the Globus Tutorial but unfortunately there are no binaries for YDL/PS3. I read In some other thread that it is possible to build from source following the same instructions for other platform but I hav not had any success.

I downloaded the source from here:
http://gridengine.sunsource.net/servlets/ProjectDocumentList/ge-V62u2_1_TAG-src.tar.gz

builted the berkeley db with apparent success but when I try to build SGE I get a lot of error's. can anyone help me out?

This is the output:

[root at auyin source]# ./aimk
Building in directory: /usr/local/src/gridengine/source
making in LINUXPPC64_26/ for LINUXPPC64 at host auyin.perrera.local
_________C_O_R_E__S_Y_S_T_E_M_____________
gcc -O3 -Wall -Werror -Wstrict-prototypes -DUSE_POLL -DLINUX -DLINUXPPC64 -DLINUXPPC64_26 -D_GNU_SOURCE -DGETHOSTBYNAME_R6 -DGETHOSTBYADDR_R8  -m64 -DLOAD_OPENSSL -I/usr/local/BerkeleyDB.4.7/include/ -DSGE_ARCH_STRING=lx26-ppc64 -DTARGET_64BIT  -DSPOOLING_dynamic -DSECURE -I/off_home/gridengine/openssl-0.9.8h-origin/lx26-ppc64/include -DCOMPILE_DC -D__SGE_COMPILE_WITH_GETTEXT__ -I/usr/local/src/gridengine/source/3rdparty/gettext/LINUXPPC64/include -D__SGE_NO_USERMAPPING__ -I../common -I../libs -I../libs/uti -I../libs/juti -I../libs/gdi -I../libs/japi -I../libs/sgeobj -I../libs/cull -I../libs/rmon -I../libs/comm -I../libs/comm/lists -I../libs/sched -I../libs/evc -I../libs/evm -I../libs/mir -I../libs/lck -I../daemons/common -I../daemons/qmaster -I../daemons/execd -I../daemons/schedd -I../clients/common -I. -I/usr/include -I/usr/include/linux -fPIC -c ../libs/sgeobj/config.c
In file included from /usr/include/_G_config.h:44,
                 from /usr/include/libio.h:32,
                 from /usr/include/stdio.h:72,
                 from ../libs/sgeobj/config.c:33:
/usr/include/gconv.h:72: error: expected declaration specifiers or ?...? before ?size_t?
/usr/include/gconv.h:88: error: expected declaration specifiers or ?...? before ?size_t?
/usr/include/gconv.h:97: error: expected declaration specifiers or ?...? before ?size_t?
/usr/include/gconv.h:174: error: expected specifier-qualifier-list before ?size_t?
In file included from /usr/include/stdio.h:72,
                 from ../libs/sgeobj/config.c:33:
/usr/include/libio.h:329: error: expected specifier-qualifier-list before ?size_t?
/usr/include/libio.h:361: error: expected declaration specifiers or ?...? before ?size_t?
/usr/include/libio.h:370: error: expected declaration specifiers or ?...? before ?size_t?
/usr/include/libio.h:486: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? before ?_IO_sgetn?
In file included from ../libs/sgeobj/config.c:33:
/usr/include/stdio.h:291: error: expected declaration specifiers or ?...? before ?size_t?
/usr/include/stdio.h:296: error: expected declaration specifiers or ?...? before ?size_t?
/usr/include/stdio.h:308: error: expected declaration specifiers or ?...? before ?size_t?
/usr/include/stdio.h:315: error: expected declaration specifiers or ?...? before ?size_t?
/usr/include/stdio.h:357: error: expected declaration specifiers or ?...? before ?size_t?
/usr/include/stdio.h:359: error: el argumento de la cadena de formato no es del tipo cadena de texto
/usr/include/stdio.h:361: error: expected declaration specifiers or ?...? before ?size_t?
/usr/include/stdio.h:567: error: expected declaration specifiers or ?...? before ?size_t?
/usr/include/stdio.h:570: error: expected declaration specifiers or ?...? before ?size_t?
/usr/include/stdio.h:580: error: expected declaration specifiers or ?...? before ?size_t?
/usr/include/stdio.h:610: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? before ?fread?
/usr/include/stdio.h:616: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? before ?fwrite?
/usr/include/stdio.h:638: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? before ?fread_unlocked?
/usr/include/stdio.h:640: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? before ?fwrite_unlocked?
In file included from /usr/include/stdio.h:835,
                 from ../libs/sgeobj/config.c:33:
/usr/include/bits/stdio.h:102: error: expected declaration specifiers or ?...? before ?size_t?
/usr/include/bits/stdio.h: In function ?getline?:
/usr/include/bits/stdio.h:104: error: ?__n? no se declaró aquí (primer uso en esta función)
/usr/include/bits/stdio.h:104: error: (Cada identificador no declarado solamente se reporta una vez
/usr/include/bits/stdio.h:104: error: ara cada funcion en la que aparece.)
/usr/include/bits/stdio.h:104: error: demasiados argumentos para la función ?__getdelim?
In file included from ../libs/sgeobj/config.c:35:
/usr/include/strings.h: En el nivel principal:
/usr/include/strings.h:34: error: expected declaration specifiers or ?...? before ?size_t?
/usr/include/strings.h:38: error: expected declaration specifiers or ?...? before ?size_t?
/usr/include/strings.h:41: error: expected declaration specifiers or ?...? before ?size_t?
/usr/include/strings.h:58: error: expected declaration specifiers or ?...? before ?size_t?
In file included from ../libs/sgeobj/config.c:37:
/usr/include/stdlib.h:140: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? before ?__ctype_get_mb_cur_max?
In file included from /usr/include/sys/types.h:133,
                 from /usr/include/stdlib.h:438,
                 from ../libs/sgeobj/config.c:37:
/usr/include/linux/time.h:10: error: expected specifier-qualifier-list before ?time_t?
/usr/include/linux/time.h:16: error: expected specifier-qualifier-list before ?time_t?
In file included from /usr/include/sys/select.h:46,
                 from /usr/include/sys/types.h:220,
                 from /usr/include/stdlib.h:438,
                 from ../libs/sgeobj/config.c:37:
/usr/include/bits/time.h:70: error: redefinición de ?struct timeval?
In file included from ../libs/sgeobj/config.c:37:
/usr/include/stdlib.h:455: error: expected declaration specifiers or ?...? before ?size_t?
/usr/include/stdlib.h:485: error: expected declaration specifiers or ?...? before ?size_t?
/usr/include/stdlib.h:487: error: un argumento que no es nulo con un número de operandos fuera de rango (argumento 1, operando 4)
/usr/include/stdlib.h:589: error: expected ?)? before ?__size?
/usr/include/stdlib.h:591: error: expected ?)? before ?__nmemb?
/usr/include/stdlib.h:600: error: expected declaration specifiers or ?...? before ?size_t?
In file included from /usr/include/stdlib.h:612,
                 from ../libs/sgeobj/config.c:37:
/usr/include/alloca.h:33: error: expected ?)? before ?__size?
In file included from ../libs/sgeobj/config.c:37:
/usr/include/stdlib.h:617: error: expected ?)? before ?__size?
/usr/include/stdlib.h:622: error: expected declaration specifiers or ?...? before ?size_t?
/usr/include/stdlib.h:622: error: expected declaration specifiers or ?...? before ?size_t?
/usr/include/stdlib.h:776: error: expected declaration specifiers or ?...? before ?size_t?
/usr/include/stdlib.h:776: error: expected declaration specifiers or ?...? before ?size_t?
/usr/include/stdlib.h:777: error: un argumento que no es nulo con un número de operandos fuera de rango (argumento 1, operando 5)
/usr/include/stdlib.h:781: error: expected declaration specifiers or ?...? before ?size_t?
/usr/include/stdlib.h:781: error: expected declaration specifiers or ?...? before ?size_t?
/usr/include/stdlib.h:782: error: un argumento que no es nulo con un número de operandos fuera de rango (argumento 1, operando 4)
/usr/include/stdlib.h:854: error: expected declaration specifiers or ?...? before ?size_t?
/usr/include/stdlib.h:857: error: expected declaration specifiers or ?...? before ?size_t?
/usr/include/stdlib.h:861: error: expected declaration specifiers or ?...? before ?size_t?
/usr/include/stdlib.h:865: error: expected declaration specifiers or ?...? before ?size_t?
/usr/include/stdlib.h:874: error: expected declaration specifiers or ?...? before ?size_t?
/usr/include/stdlib.h:877: error: expected ?)? before ?*? token
/usr/include/stdlib.h:881: error: expected declaration specifiers or ?...? before ?wchar_t?
/usr/include/stdlib.h:885: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? before ?mbstowcs?
/usr/include/stdlib.h:888: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? before ?wcstombs?
/usr/include/stdlib.h:951: error: expected declaration specifiers or ?...? before ?size_t?
In file included from ../libs/cull/cull_list.h:42,
                 from ../libs/cull/cull_listP.h:35,
                 from ../libs/cull/cull.h:37,
                 from ../libs/sgeobj/config.c:39:
../libs/cull/pack.h:101: error: expected specifier-qualifier-list before ?size_t?
In file included from ../libs/cull/cull_list.h:43,
                 from ../libs/cull/cull_listP.h:35,
                 from ../libs/cull/cull.h:37,
                 from ../libs/sgeobj/config.c:39:
../libs/uti/sge_dstring.h:66: error: expected specifier-qualifier-list before ?size_t?
../libs/uti/sge_dstring.h:72: error: expected declaration specifiers or ?...? before ?size_t?
../libs/uti/sge_dstring.h:77: error: expected declaration specifiers or ?...? before ?time_t?
../libs/uti/sge_dstring.h:93: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? before ?sge_dstring_strlen?
../libs/uti/sge_dstring.h:95: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? before ?sge_dstring_remaining?
In file included from ../libs/cull/cull.h:47,
                 from ../libs/sgeobj/config.c:39:
../libs/cull/cull_pack.h:58: error: expected declaration specifiers or ?...? before ?size_t?
../libs/cull/cull_pack.h:58: error: expected declaration specifiers or ?...? before ?size_t?
In file included from ../libs/uti/sge_parse_num_par.h:36,
                 from ../libs/sgeobj/config.c:40:
/usr/include/sys/time.h:58: error: redefinición de ?struct timezone?
/usr/include/sys/time.h:96: error: expected identifier before numeric constant
/usr/include/sys/time.h:110: error: redefinición de ?struct itimerval?
In file included from /usr/include/linux/signal.h:4,
                 from /usr/include/pthread.h:27,
                 from ../libs/comm/lists/cl_lists.h:39,
                 from ../libs/comm/cl_commlib.h:39,
                 from ../libs/rmon/rmon.h:39,
                 from ../libs/rmon/sgermon.h:38,
                 from ../libs/sgeobj/config.c:41:
/usr/include/asm/signal.h:18: error: tipos en conflicto para ?sigset_t?
/usr/include/sys/select.h:38: error: la declaración previa de ?sigset_t? estaba aquí
In file included from /usr/include/linux/signal.h:4,
                 from /usr/include/pthread.h:27,
                 from ../libs/comm/lists/cl_lists.h:39,
                 from ../libs/comm/cl_commlib.h:39,
                 from ../libs/rmon/rmon.h:39,
                 from ../libs/rmon/sgermon.h:38,
                 from ../libs/sgeobj/config.c:41:
/usr/include/asm/signal.h:120: error: expected specifier-qualifier-list before ?size_t?
In file included from /usr/include/asm/siginfo.h:16,
                 from /usr/include/linux/signal.h:5,
                 from /usr/include/pthread.h:27,
                 from ../libs/comm/lists/cl_lists.h:39,
                 from ../libs/comm/cl_commlib.h:39,
                 from ../libs/rmon/rmon.h:39,
                 from ../libs/rmon/sgermon.h:38,
                 from ../libs/sgeobj/config.c:41:
/usr/include/asm-generic/siginfo.h:56: error: expected specifier-qualifier-list before ?timer_t?
/usr/include/asm-generic/siginfo.h:75: error: expected specifier-qualifier-list before ?clock_t?
In file included from ../libs/comm/lists/cl_lists.h:39,
                 from ../libs/comm/cl_commlib.h:39,
                 from ../libs/rmon/rmon.h:39,
                 from ../libs/rmon/sgermon.h:38,
                 from ../libs/sgeobj/config.c:41:
/usr/include/pthread.h:293: error: expected declaration specifiers or ?...? before ?size_t?
/usr/include/pthread.h:294: error: un argumento que no es nulo con un número de operandos fuera de rango (argumento 1, operando 2)
/usr/include/pthread.h:298: error: expected declaration specifiers or ?...? before ?size_t?
/usr/include/pthread.h:357: error: expected declaration specifiers or ?...? before ?size_t?
/usr/include/pthread.h:358: error: un argumento que no es nulo con un número de operandos fuera de rango (argumento 1, operando 2)
/usr/include/pthread.h:364: error: expected declaration specifiers or ?...? before ?size_t?
/usr/include/pthread.h:371: error: expected declaration specifiers or ?...? before ?size_t?
/usr/include/pthread.h:372: error: un argumento que no es nulo con un número de operandos fuera de rango (argumento 1, operando 3)
/usr/include/pthread.h:378: error: expected declaration specifiers or ?...? before ?size_t?
/usr/include/pthread.h:385: error: expected declaration specifiers or ?...? before ?size_t?
/usr/include/pthread.h:386: error: expected ?;?, ?,? or ?)? before ?*? token
/usr/include/pthread.h:392: error: expected declaration specifiers or ?...? before ?size_t?
/usr/include/pthread.h:393: error: expected declaration specifiers or ?...? before ?cpu_set_t?
/usr/include/pthread.h:394: error: un argumento que no es nulo con un número de operandos fuera de rango (argumento 1, operando 3)
/usr/include/pthread.h:442: error: expected declaration specifiers or ?...? before ?size_t?
/usr/include/pthread.h:443: error: expected ?;?, ?,? or ?)? before ?*? token
/usr/include/pthread.h:447: error: expected declaration specifiers or ?...? before ?size_t?
/usr/include/pthread.h:448: error: expected declaration specifiers or ?...? before ?cpu_set_t?
/usr/include/pthread.h:449: error: un argumento que no es nulo con un número de operandos fuera de rango (argumento 1, operando 3)
In file included from /usr/include/sys/uio.h:29,
                 from /usr/include/sys/socket.h:27,
                 from /usr/include/netinet/in.h:24,
                 from /usr/include/arpa/inet.h:23,
                 from ../libs/comm/cl_xml_parsing.h:36,
                 from ../libs/comm/cl_data_types.h:42,
                 from ../libs/comm/cl_commlib.h:40,
                 from ../libs/rmon/rmon.h:39,
                 from ../libs/rmon/sgermon.h:38,
                 from ../libs/sgeobj/config.c:41:
/usr/include/bits/uio.h:47: error: expected specifier-qualifier-list before ?size_t?
In file included from /usr/include/sys/socket.h:35,
                 from /usr/include/netinet/in.h:24,
                 from /usr/include/arpa/inet.h:23,
                 from ../libs/comm/cl_xml_parsing.h:36,
                 from ../libs/comm/cl_data_types.h:42,
                 from ../libs/comm/cl_commlib.h:40,
                 from ../libs/rmon/rmon.h:39,
                 from ../libs/rmon/sgermon.h:38,
                 from ../libs/sgeobj/config.c:41:
/usr/include/bits/socket.h:221: error: expected specifier-qualifier-list before ?size_t?
/usr/include/bits/socket.h:235: error: expected specifier-qualifier-list before ?size_t?
/usr/include/bits/socket.h: In function ?__cmsg_nxthdr?:
/usr/include/bits/socket.h:272: error: ?size_t? no se declaró aquí (primer uso en esta función)
/usr/include/bits/socket.h:272: error: expected ?)? before ?__cmsg?
/usr/include/bits/socket.h:277: error: ?struct cmsghdr? no tiene un miembro llamado ?cmsg_len?
/usr/include/bits/socket.h:277: error: expected ?)? before ?~? token
/usr/include/bits/socket.h:278: error: ?struct msghdr? no tiene un miembro llamado ?msg_control?
/usr/include/bits/socket.h:279: error: ?struct msghdr? no tiene un miembro llamado ?msg_controllen?
/usr/include/bits/socket.h:280: error: ?struct cmsghdr? no tiene un miembro llamado ?cmsg_len?
/usr/include/bits/socket.h:280: error: expected ?)? before ?~? token
/usr/include/bits/socket.h:281: error: ?struct msghdr? no tiene un miembro llamado ?msg_control?
/usr/include/bits/socket.h:281: error: ?struct msghdr? no tiene un miembro llamado ?msg_controllen?
In file included from /usr/include/netinet/in.h:24,
                 from /usr/include/arpa/inet.h:23,
                 from ../libs/comm/cl_xml_parsing.h:36,
                 from ../libs/comm/cl_data_types.h:42,
                 from ../libs/comm/cl_commlib.h:40,
                 from ../libs/rmon/rmon.h:39,
                 from ../libs/rmon/sgermon.h:38,
                 from ../libs/sgeobj/config.c:41:
/usr/include/sys/socket.h: En el nivel principal:
/usr/include/sys/socket.h:136: error: expected declaration specifiers or ?...? before ?size_t?
/usr/include/sys/socket.h:143: error: expected declaration specifiers or ?...? before ?size_t?
/usr/include/sys/socket.h:150: error: expected declaration specifiers or ?...? before ?size_t?
/usr/include/sys/socket.h:161: error: expected declaration specifiers or ?...? before ?size_t?
In file included from ../libs/comm/cl_xml_parsing.h:36,
                 from ../libs/comm/cl_data_types.h:42,
                 from ../libs/comm/cl_commlib.h:40,
                 from ../libs/rmon/rmon.h:39,
                 from ../libs/rmon/sgermon.h:38,
                 from ../libs/sgeobj/config.c:41:
/usr/include/arpa/inet.h:78: error: expected declaration specifiers or ?...? before ?size_t?
/usr/include/arpa/inet.h:84: error: expected declaration specifiers or ?...? before ?size_t?
/usr/include/arpa/inet.h:90: error: expected declaration specifiers or ?...? before ?size_t?
In file included from ../libs/sgeobj/config.c:44:
../libs/uti/sge_string.h:94: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? before ?sge_strlcpy?
cc1: warnings being treated as errors
../libs/sgeobj/config.c: In function ?read_config_list?:
../libs/sgeobj/config.c:112: aviso: declaración implícita de la función ?strcmp?
../libs/sgeobj/config.c:122: aviso: declaración implícita de la función ?strchr?
../libs/sgeobj/config.c:122: aviso: declaración implícita incompatible de la función interna ?strchr?
../libs/sgeobj/config.c:137: aviso: declaración implícita de la función ?strlen?
../libs/sgeobj/config.c:137: aviso: declaración implícita incompatible de la función interna ?strlen?
../libs/sgeobj/config.c:140: aviso: declaración implícita incompatible de la función interna ?strchr?
../libs/sgeobj/config.c: In function ?get_conf_value?:
../libs/sgeobj/config.c:261: aviso: declaración implícita de la función ?strcpy?
../libs/sgeobj/config.c:261: aviso: declaración implícita incompatible de la función interna ?strcpy?
../libs/sgeobj/config.c: In function ?set_conf_string?:
../libs/sgeobj/config.c:303: aviso: declaración implícita incompatible de la función interna ?strcpy?
../libs/sgeobj/config.c:307: aviso: declaración implícita incompatible de la función interna ?strcpy?
../libs/sgeobj/config.c:311: aviso: declaración implícita incompatible de la función interna ?strcpy?
../libs/sgeobj/config.c: In function ?set_conf_double?:
../libs/sgeobj/config.c:561: error: demasiados argumentos para la función ?strncasecmp?
../libs/sgeobj/config.c: In function ?set_conf_list?:
../libs/sgeobj/config.c:834: aviso: declaración implícita incompatible de la función interna ?strcpy?
../libs/sgeobj/config.c:838: aviso: declaración implícita incompatible de la función interna ?strcpy?
../libs/sgeobj/config.c:842: aviso: declaración implícita incompatible de la función interna ?strcpy?
make: *** [config.o] Error 1
not done

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